SMTL ID : 2yzl.2 (1 other biounit)

Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.139, E.140 Chain B: N.139, E.140 Ligands: SO4.4 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.140, A:E.140 Water bridges: B:D.141 SO4.2: 5 residues within 4Å: Chain A: I.98, R.100, G.105, S.106, R.206 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.106, A:S.106 Water bridges: A:R.100, A:S.106, A:R.109, A:D.181, A:R.206 Salt bridges: A:R.100, A:R.206 SO4.4: 5 residues within 4Å: Chain A: N.139, E.140 Chain B: N.139, E.140 Ligands: SO4.1 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.140, B:E.140 Water bridges: A:D.141 SO4.5: 5 residues within 4Å: Chain B: I.98, R.100, G.105, S.106, R.206 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.106, B:S.106 Water bridges: B:R.100, B:S.106, B:R.109, B:D.181, B:R.206 Salt bridges: B:R.100, B:R.206

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 16 residues within 4Å: Chain A: Y.15, G.17, K.18, A.19, K.20, I.22, V.30, H.75, K.88, K.89, V.90, I.92, K.129, E.185, A.197, D.198 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.17, A:K.18, A:A.19, A:K.20, A:H.75, A:V.90, A:K.129, A:K.129, A:D.198 Water bridges: A:K.18, A:K.18, A:K.20 Salt bridges: A:K.18, A:K.20, A:K.129 ADP.6: 16 residues within 4Å: Chain B: Y.15, G.17, K.18, A.19, K.20, I.22, V.30, H.75, K.88, K.89, V.90, I.92, K.129, E.185, A.197, D.198 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:Y.15, B:G.17, B:K.18, B:A.19, B:K.20, B:H.75, B:V.90, B:K.129, B:K.129, B:D.198 Water bridges: B:K.18, B:K.18, B:K.20 Salt bridges: B:K.18, B:K.20, B:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanagawa, M. et al., Crystal structure of phosphoribosylaminoimidazole-succinocarboxamide synthase with ADP from Methanocaldococcus jannaschii. To be Published

Release Date

2007-11-06

Peptides

Phosphoribosylaminoimidazole-succinocarboxamide synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phosphoribosylaminoimidazole-succinocarboxamide synthase

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