SMTL ID : 2z0a.1 (1 other biounit)

Crystal structure of RNA-binding domain of NS1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x GLY: GLYCINE(Non-covalent)

GLY.1: 5 residues within 4Å: Chain A: Q.17, A.67, Q.70, I.71, R.74 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.70, A:R.74, A:R.74 Water bridges: A:Q.17 GLY.2: 4 residues within 4Å: Chain A: K.27, L.43, R.44, Q.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.27, A:Q.47 Salt bridges: A:K.27, A:K.48

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 7 residues within 4Å: Chain A: D.19, W.23, R.26, D.46, S.49, L.50, R.53 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:D.19, A:D.46, A:L.50 Hydrogen bonds: A:D.19, A:W.23, A:D.46, A:S.49 Salt bridges: A:R.26, A:R.53, B:R.42 SIN.4: 7 residues within 4Å: Chain A: R.42 Chain B: D.19, R.26, D.46, S.49, L.50, R.53 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:D.46 Hydrogen bonds: B:D.19 Water bridges: B:R.26, A:R.42 Salt bridges: B:R.26, B:R.53, B:R.53, A:R.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saijo, S. et al., Crystal structure of RNA-binding domain of NS1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1). To be Published

Release Date

2008-05-13

Peptides

Nonstructural protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nonstructural protein 1

Related Entries With Identical Sequence