SMTL ID : 2z1q.1

Crystal structure of acyl CoA dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: I.116, Y.146, L.148, T.149, G.154, S.155, W.181, S.183, I.225, I.393, F.397, E.402, I.403, L.406, Q.476 Chain B: R.289, Q.291, F.292, I.296, F.299, I.302, I.372, H.373, G.374, G.375, Y.376 20 PLIP interactions: 6 interactions with chain B, 14 interactions with chain A Hydrogen bonds: B:Y.285, B:I.372, B:G.375, A:Y.146, A:L.148, A:T.149, A:T.149, A:S.155, A:S.155, A:S.183, A:Q.476 Salt bridges: B:R.289, B:R.289 pi-Stacking: B:F.299, A:F.397 Hydrophobic interactions: A:W.181, A:I.225, A:I.393, A:F.397 Water bridges: A:Y.146 FAD.2: 26 residues within 4Å: Chain A: R.289, Q.291, F.292, I.296, F.299, I.302, I.372, H.373, G.374, G.375 Chain B: I.116, Y.146, L.148, T.149, G.154, S.155, W.181, S.183, I.225, T.230, I.393, F.397, E.402, I.403, L.406, Q.476 23 PLIP interactions: 17 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:W.181, B:W.181, B:I.225, B:T.230, B:I.393, B:F.397 Hydrogen bonds: B:Y.146, B:L.148, B:T.149, B:T.149, B:S.155, B:S.155, B:S.183, B:Q.476, A:I.372, A:G.375 Water bridges: B:Y.146, B:S.153, A:R.289 pi-Stacking: B:F.397, A:F.299 Salt bridges: A:R.289, A:R.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hikima, T. et al., Crystal structure of acyl CoA dehydrogenase from Thermus thermophilus HB8. To be Published

Release Date

2008-05-13

Peptides

Acyl-CoA dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyl-CoA dehydrogenase