SMTL ID : 2z3j.1

Crystal structure of blasticidin S deaminase (BSD) R90K mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.54, C.88, C.91 Ligands: CAC.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.54, A:C.88, A:C.91 ZN.4: 4 residues within 4Å: Chain B: C.54, C.88, C.91 Ligands: CAC.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.54, B:C.88, B:C.91 ZN.6: 4 residues within 4Å: Chain C: C.54, C.88, C.91 Ligands: CAC.7 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.54, C:C.88, C:C.91 ZN.8: 4 residues within 4Å: Chain D: C.54, C.88, C.91 Ligands: CAC.9 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.54, D:C.88, D:C.91

4 x CAC: CACODYLATE ION(Non-covalent)

CAC.2: 11 residues within 4Å: Chain A: V.29, C.54, E.56, A.76, L.85, S.86, P.87, C.88, C.91 Chain B: Y.126 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.55, A:C.88 CAC.5: 11 residues within 4Å: Chain A: Y.126 Chain B: V.29, C.54, E.56, A.76, L.85, S.86, P.87, C.88, C.91 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.55, B:C.88 CAC.7: 11 residues within 4Å: Chain C: V.29, C.54, E.56, A.76, L.85, S.86, P.87, C.88, C.91 Chain D: Y.126 Ligands: ZN.6 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.55, C:C.88 CAC.9: 11 residues within 4Å: Chain C: Y.126 Chain D: V.29, C.54, E.56, A.76, L.85, S.86, P.87, C.88, C.91 Ligands: ZN.8 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.55, D:C.88

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 12 residues within 4Å: Chain A: T.50, G.51, K.90 Chain B: T.50, G.51, K.90 Chain C: T.50, G.51, K.90 Chain D: T.50, G.51, K.90 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumasaka, T. et al., Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc. J.Biol.Chem. (2007)

Release Date

2007-10-23

Peptides

Blasticidin-S deaminase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Blasticidin-S deaminase