SMTL ID : 2z4b.1

Estrogen receptor beta ligand-binding domain complexed to a benzopyran ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

2 x DC8: (3AS,4R,9BR)-2,2-DIFLUORO-4-(4-HYDROXYPHENYL)-1,2,3,3A,4,9B-HEXAHYDROCYCLOPENTA[C]CHROMEN-8-OL(Non-covalent)

DC8.1: 18 residues within 4Å: Chain A: M.47, L.50, T.51, L.53, E.57, M.88, L.91, M.92, R.98, F.108, I.125, I.128, F.129, L.132, G.224, H.227, L.228, M.231 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.53, A:L.91, A:F.108, A:I.128, A:L.228 Hydrogen bonds: A:L.91, A:R.98, A:H.227 Water bridges: A:L.95 pi-Stacking: A:F.108 DC8.2: 18 residues within 4Å: Chain B: M.47, L.50, T.51, A.54, E.57, M.88, L.91, M.92, R.98, F.108, I.125, I.128, F.129, L.132, G.224, H.227, L.228, M.231 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.54, B:L.91, B:F.108, B:I.128, B:L.228, B:L.228 Hydrogen bonds: B:E.57, B:R.98 Water bridges: B:L.95 pi-Stacking: B:F.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Richardson, T.I. et al., Benzopyrans as selective estrogen receptor beta agonists (SERBAs). Part 3: Synthesis of cyclopentanone and cyclohexanone intermediates for C-ring modification. Bioorg.Med.Chem.Lett. (2007)

Release Date

2007-08-07

Peptides

Estrogen receptor beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Estrogen receptor beta

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