SMTL ID : 2z5y.2 (1 other biounit)

Crystal Structure of Human Monoamine Oxidase A (G110A) with Harmine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 39 residues within 4Å: Chain A: I.8, G.9, G.10, G.11, I.12, S.13, L.31, E.32, A.33, R.34, G.38, G.39, R.40, T.41, V.54, G.55, G.56, A.57, Y.58, H.231, P.232, V.233, A.261, I.262, P.263, L.266, V.292, K.294, W.386, Y.391, C.395, Y.396, G.423, T.424, G.432, Y.433, M.434, A.437 Ligands: HRM.2 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:R.40, A:V.292, A:K.294, A:W.386, A:Y.396 Hydrogen bonds: A:G.10, A:G.10, A:G.11, A:S.13, A:A.33, A:R.34, A:R.34, A:G.38, A:R.40, A:G.56, A:A.57, A:Y.58, A:Y.58, A:V.233, A:V.233, A:T.424, A:G.432, A:M.434 Water bridges: A:I.12, A:I.12, A:G.14, A:G.39, A:R.40, A:R.40, A:Q.63, A:E.435 Salt bridges: A:R.40, A:R.40 pi-Stacking: A:Y.391, A:Y.396 FAD.5: 39 residues within 4Å: Chain B: I.8, G.9, G.10, G.11, I.12, S.13, L.31, E.32, A.33, R.34, G.38, G.39, R.40, T.41, V.54, G.55, G.56, A.57, Y.58, H.231, P.232, V.233, A.261, I.262, P.263, L.266, V.292, K.294, W.386, Y.391, C.395, Y.396, G.423, T.424, G.432, Y.433, M.434, A.437 Ligands: HRM.6 35 PLIP interactions: 35 interactions with chain B Hydrophobic interactions: B:R.40, B:V.292, B:K.294, B:W.386, B:Y.396 Hydrogen bonds: B:G.10, B:G.10, B:G.11, B:S.13, B:A.33, B:R.34, B:R.34, B:G.38, B:R.40, B:G.56, B:A.57, B:Y.58, B:Y.58, B:V.233, B:V.233, B:T.424, B:G.432, B:M.434 Water bridges: B:I.12, B:I.12, B:G.14, B:G.39, B:R.40, B:R.40, B:Q.63, B:E.435 Salt bridges: B:R.40, B:R.40 pi-Stacking: B:Y.391, B:Y.396 FAD.9: 39 residues within 4Å: Chain C: I.8, G.9, G.10, G.11, I.12, S.13, L.31, E.32, A.33, R.34, G.38, G.39, R.40, T.41, V.54, G.55, G.56, A.57, Y.58, H.231, P.232, V.233, A.261, I.262, P.263, L.266, V.292, K.294, W.386, Y.391, C.395, Y.396, G.423, T.424, G.432, Y.433, M.434, A.437 Ligands: HRM.10 36 PLIP interactions: 36 interactions with chain C Hydrophobic interactions: C:R.40, C:V.292, C:K.294, C:W.386, C:Y.396 Hydrogen bonds: C:G.10, C:G.10, C:G.11, C:S.13, C:A.33, C:R.34, C:R.34, C:G.38, C:R.40, C:G.56, C:A.57, C:Y.58, C:Y.58, C:V.233, C:V.233, C:T.424, C:T.424, C:G.432, C:M.434 Water bridges: C:I.12, C:I.12, C:G.14, C:G.39, C:R.40, C:R.40, C:Q.63, C:E.435 Salt bridges: C:R.40, C:R.40 pi-Stacking: C:Y.391, C:Y.396 FAD.13: 39 residues within 4Å: Chain D: I.8, G.9, G.10, G.11, I.12, S.13, L.31, E.32, A.33, R.34, G.38, G.39, R.40, T.41, V.54, G.55, G.56, A.57, Y.58, H.231, P.232, V.233, A.261, I.262, P.263, L.266, V.292, K.294, W.386, Y.391, C.395, Y.396, G.423, T.424, G.432, Y.433, M.434, A.437 Ligands: HRM.14 36 PLIP interactions: 36 interactions with chain D Hydrophobic interactions: D:R.40, D:V.292, D:K.294, D:W.386, D:Y.396 Hydrogen bonds: D:G.10, D:G.10, D:G.11, D:S.13, D:A.33, D:R.34, D:R.34, D:G.38, D:R.40, D:G.56, D:A.57, D:Y.58, D:Y.58, D:V.233, D:V.233, D:T.424, D:T.424, D:G.432, D:M.434 Water bridges: D:I.12, D:I.12, D:G.14, D:G.39, D:R.40, D:R.40, D:Q.63, D:E.435 Salt bridges: D:R.40, D:R.40 pi-Stacking: D:Y.391, D:Y.396

4 x HRM: 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE(Non-covalent)

HRM.2: 11 residues within 4Å: Chain A: I.169, N.170, F.197, Q.204, C.312, I.324, L.326, F.341, Y.396, Y.433 Ligands: FAD.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.204, A:I.324, A:I.324, A:L.326, A:F.341, A:Y.396 Water bridges: A:Q.204 HRM.6: 11 residues within 4Å: Chain B: I.169, N.170, F.197, Q.204, C.312, I.324, L.326, F.341, Y.396, Y.433 Ligands: FAD.5 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Q.204, B:I.324, B:I.324, B:L.326, B:F.341, B:Y.396 Water bridges: B:Q.204 HRM.10: 11 residues within 4Å: Chain C: I.169, N.170, F.197, Q.204, C.312, I.324, L.326, F.341, Y.396, Y.433 Ligands: FAD.9 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:Q.204, C:I.324, C:I.324, C:L.326, C:F.341, C:Y.396 Water bridges: C:Q.204 HRM.14: 11 residues within 4Å: Chain D: I.169, N.170, F.197, Q.204, C.312, I.324, L.326, F.341, Y.396, Y.433 Ligands: FAD.13 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:Q.204, D:I.324, D:I.324, D:L.326, D:F.341, D:Y.396 Water bridges: D:Q.204

8 x DCX: DECYL(DIMETHYL)PHOSPHINE OXIDE(Non-covalent)

DCX.3: 4 residues within 4Å: Chain A: T.478, W.480, E.481 Ligands: DCX.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.480, A:W.480 Hydrogen bonds: A:E.481 DCX.4: 7 residues within 4Å: Chain A: V.104, W.105, P.107, Y.110, L.111 Chain D: T.498 Ligands: DCX.3 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain A Hydrophobic interactions: D:T.498, A:Y.110, A:Y.110, A:L.111 DCX.7: 4 residues within 4Å: Chain B: T.478, W.480, E.481 Ligands: DCX.8 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.480, B:W.480 Hydrogen bonds: B:E.481 DCX.8: 7 residues within 4Å: Chain B: V.104, W.105, P.107, Y.110, L.111 Chain C: T.498 Ligands: DCX.7 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:Y.110, B:Y.110, B:L.111, C:T.498 DCX.11: 4 residues within 4Å: Chain C: T.478, W.480, E.481 Ligands: DCX.12 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:W.480, C:W.480 Hydrogen bonds: C:T.478, C:E.481 DCX.12: 7 residues within 4Å: Chain B: T.498 Chain C: V.104, W.105, P.107, Y.110, L.111 Ligands: DCX.11 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:Y.110, C:Y.110, C:L.111, B:T.498 DCX.15: 4 residues within 4Å: Chain D: T.478, W.480, E.481 Ligands: DCX.16 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:W.480, D:W.480 Hydrogen bonds: D:T.478, D:E.481 DCX.16: 7 residues within 4Å: Chain A: T.498 Chain D: V.104, W.105, P.107, Y.110, L.111 Ligands: DCX.15 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:Y.110, D:Y.110, D:L.111, A:T.498

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Son, S.Y. et al., Structure of human monoamine oxidase A at 2.2-A resolution: The control of opening the entry for substrates/inhibitors. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-04-01

Peptides

Amine oxidase [flavin-containing] A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Amine oxidase [flavin-containing] A

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