SMTL ID : 2z64.1

Crystal structure of mouse TLR4 and mouse MD-2 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: T.520, D.522, S.524, F.544, N.546, V.573 Ligands: NAG-NAG-BMA.2, NAG-NAG-BMA.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.544

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.2: 8 residues within 4Å: Chain A: S.476, K.477, L.496, N.498, S.500, D.522 Ligands: NAG-NAG.1, NAG-NAG.1 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 3 residues within 4Å: Chain A: N.178, H.202, R.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.230, A:R.230

1 x NAG- NAG- BMA- FUL: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-FUL.4: 3 residues within 4Å: Chain A: Q.563, E.567, N.595 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.567 Hydrogen bonds: A:E.567

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.8 NAG.6: 2 residues within 4Å: Chain A: D.23, N.49 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.23 NAG.7: 2 residues within 4Å: Chain A: G.120, N.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.146 NAG.8: 1 residues within 4Å: Chain A: N.211 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain A: N.281, H.301 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain A: L.440, T.443, N.466 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain B: C.5, N.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.6 NAG.12: 3 residues within 4Å: Chain B: E.44, T.92, N.94 No protein-ligand interaction detected (PLIP) NAG.13: 6 residues within 4Å: Chain B: Q.2, D.18, R.112, V.114, N.130, T.132 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.M. et al., Crystal Structure of the TLR4-MD-2 Complex with Bound Endotoxin Antagonist Eritoran. Cell(Cambridge,Mass.) (2007)

Release Date

2007-09-18

Peptides

Toll-like receptor 4: A
Lymphocyte antigen 96: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Toll-like receptor 4

Lymphocyte antigen 96