SMTL ID : 2z66.3 (3 other biounits)

Crystal structure of the VT3 hybrid of human TLR4 and hagfish VLRB.61

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: S.207, V.227, D.229, S.231, F.252, N.254, V.281 Ligands: NAG-NAG.2, NAG-NAG.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.252

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 8 residues within 4Å: Chain A: S.183, Q.184, N.205, V.227, D.229, L.232 Ligands: NAG-NAG-BMA.1, NAG-NAG-BMA.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.232 NAG-NAG.4: 3 residues within 4Å: Chain A: S.150, S.151, N.176 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUL: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUL.3: 1 residues within 4Å: Chain A: N.303 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 6 residues within 4Å: Chain A: T.237, E.265, H.266, Q.267, S.268, F.269 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.265, A:S.268, A:F.269 Water bridges: A:Q.241 Salt bridges: A:H.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.M. et al., Crystal Structure of the TLR4-MD-2 Complex with Bound Endotoxin Antagonist Eritoran. Cell(Cambridge,Mass.) (2007)

Release Date

2007-09-18

Peptides

Variable lymphocyte receptor B, Toll-like receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Variable lymphocyte receptor B, Toll-like receptor 4

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