- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.1: 19 residues within 4Å:- Chain A: M.32, T.39, Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.66, L.83, H.87, L.91, V.93, N.97, F.98, L.101, L.136
- Ligands: CMO.2
20 PLIP interactions:19 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.42, A:Y.42, A:F.43, A:K.61, A:A.65, A:L.66, A:L.83, A:L.91, A:L.91, A:V.93, A:N.97, A:L.136
- Water bridges: A:H.58
- Salt bridges: A:H.45, A:K.61
- pi-Stacking: A:H.58, A:H.87, A:H.87
- Metal complexes: A:H.87, CMO.2
HEM.3: 20 residues within 4Å:- Chain B: T.38, F.41, F.42, F.45, K.59, H.63, K.66, V.67, S.70, F.71, F.85, L.88, H.92, L.96, V.98, N.102, F.103, L.106, L.141
- Ligands: CMO.4
28 PLIP interactions:27 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:T.38, B:F.41, B:F.41, B:F.42, B:F.42, B:V.67, B:F.71, B:F.71, B:F.85, B:L.88, B:L.96, B:V.98, B:N.102, B:F.103, B:F.103, B:L.106, B:L.141
- Water bridges: B:S.44, B:H.63, B:H.63
- Salt bridges: B:K.59, B:K.66
- pi-Stacking: B:H.63, B:H.63, B:H.92, B:H.92
- Metal complexes: B:H.92, CMO.4
HEM.5: 19 residues within 4Å:- Chain C: M.32, T.39, Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.66, L.83, H.87, L.91, V.93, N.97, F.98, L.101, L.136
- Ligands: CMO.6
19 PLIP interactions:18 interactions with chain C, 1 Ligand-Ligand interactions- Hydrophobic interactions: C:Y.42, C:Y.42, C:F.43, C:K.61, C:A.65, C:L.66, C:L.83, C:L.91, C:L.91, C:V.93, C:N.97, C:L.136
- Salt bridges: C:H.45, C:K.61
- pi-Stacking: C:H.58, C:H.87, C:H.87
- Metal complexes: C:H.87, CMO.6
HEM.7: 20 residues within 4Å:- Chain D: T.38, F.41, F.42, F.45, K.59, H.63, K.66, V.67, S.70, F.71, F.85, L.88, H.92, L.96, V.98, N.102, F.103, L.106, L.141
- Ligands: CMO.8
28 PLIP interactions:27 interactions with chain D, 1 Ligand-Ligand interactions- Hydrophobic interactions: D:T.38, D:F.41, D:F.41, D:F.42, D:F.42, D:V.67, D:F.71, D:F.71, D:F.85, D:L.88, D:L.96, D:V.98, D:N.102, D:F.103, D:F.103, D:L.106, D:L.141
- Water bridges: D:S.44, D:K.59, D:H.63
- Salt bridges: D:K.59, D:K.66
- pi-Stacking: D:H.63, D:H.63, D:H.92, D:H.92
- Metal complexes: D:H.92, CMO.8
- 4 x CMO: CARBON MONOXIDE(Non-functional Binders)
CMO.2: 5 residues within 4Å:- Chain A: F.43, H.58, V.62, H.87
- Ligands: HEM.1
No protein-ligand interaction detected (PLIP)CMO.4: 5 residues within 4Å:- Chain B: L.28, H.63, V.67, H.92
- Ligands: HEM.3
No protein-ligand interaction detected (PLIP)CMO.6: 5 residues within 4Å:- Chain C: F.43, H.58, V.62, H.87
- Ligands: HEM.5
No protein-ligand interaction detected (PLIP)CMO.8: 5 residues within 4Å:- Chain D: L.28, H.63, V.67, H.92
- Ligands: HEM.7
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kuwada, T. et al., Crystal Structure of the Ligated Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea. To be Published
- Release Date
- 2007-08-28
- Peptides
- Hemoglobin D subunit alpha: AC
Hemoglobin A/D subunit beta: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x CMO: CARBON MONOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kuwada, T. et al., Crystal Structure of the Ligated Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea. To be Published
- Release Date
- 2007-08-28
- Peptides
- Hemoglobin D subunit alpha: AC
Hemoglobin A/D subunit beta: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B