- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
SAH.5: 19 residues within 4Å:- Chain A: L.10, T.36, S.37, P.85, G.86, D.87, V.90, A.91, T.92, S.115, I.116, F.165, L.166, L.206, R.208, A.209, P.233, H.234, I.235
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:S.37, A:D.87, A:V.90, A:I.116, A:L.166, A:L.166, A:R.208, A:A.209, A:A.209
- Water bridges: A:S.37, A:L.166
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.6: 7 residues within 4Å:- Chain A: F.34, M.39, T.42, T.43, L.44, I.47, V.57
No protein-ligand interaction detected (PLIP)MES.12: 9 residues within 4Å:- Chain B: G.9, T.36, S.37, P.85, G.86, A.91, S.115, I.116, F.165
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:I.116
- Water bridges: B:G.9, B:S.37, B:D.87, B:D.87
MES.13: 4 residues within 4Å:- Chain B: D.200, Y.220, K.222, E.259
7 PLIP interactions:7 interactions with chain B- Water bridges: B:D.200, B:K.222, B:K.222, B:E.259
- Salt bridges: B:D.200, B:K.222, B:E.259
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 4 residues within 4Å:- Chain A: Y.11, S.211, L.212, N.213
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:Y.11, A:Y.11, A:L.212, A:N.213, A:N.213, A:N.213
- Water bridges: A:D.12, A:S.211
GOL.8: 7 residues within 4Å:- Chain A: V.63, E.64, L.65, F.67, E.68, L.97, R.100
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.67, A:E.68, A:R.100
GOL.14: 7 residues within 4Å:- Chain B: F.34, L.38, M.39, T.42, T.43, L.44, R.173
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:M.39, B:T.43, B:R.173, B:R.173
- Water bridges: B:L.44
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mizutani, H. et al., Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3. To be Published
- Release Date
- 2007-08-28
- Peptides
- diphthine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)
- 3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mizutani, H. et al., Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3. To be Published
- Release Date
- 2007-08-28
- Peptides
- diphthine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B