SMTL ID : 2z71.1

Structure of truncated mutant CYS1GLY of penicillin V acylase from bacillus sphaericus co-crystallized with penicillin V

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x PNV: (2S,5R,6R)-3,3-DIMETHYL-7-OXO-6-(2-PHENOXYACETAMIDO)-4-THIA-1- AZABICYCLO(3.2.0)HEPTANE-2-CARBOXYLIC ACID(Non-covalent)

PNV.1: 11 residues within 4Å: Chain A: D.20, T.22, Y.82, N.175, P.225, R.228, N.269, E.270, D.274 Chain B: G.211, Q.212 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.22, A:Y.82, A:N.175, A:P.225, B:Q.212 Hydrogen bonds: A:N.269, B:Q.212 PNV.2: 11 residues within 4Å: Chain A: G.211, Q.212 Chain B: D.20, Y.82, N.175, R.228, T.268, N.269, E.270, K.272, D.274 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:Q.212, B:N.175, B:T.268, B:K.272 Hydrogen bonds: A:Q.212, B:N.269, B:E.270 PNV.3: 11 residues within 4Å: Chain C: D.20, T.22, Y.82, N.175, P.225, R.228, N.269, E.270, D.274 Chain D: G.211, Q.212 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:T.22, C:Y.82, C:N.175, C:P.225, D:Q.212 Hydrogen bonds: C:N.269, D:Q.212 PNV.4: 11 residues within 4Å: Chain C: G.211, Q.212 Chain D: D.20, Y.82, N.175, R.228, T.268, N.269, E.270, K.272, D.274 7 PLIP interactions: 2 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:Q.212, D:N.175, D:T.268, D:K.272 Hydrogen bonds: C:Q.212, D:N.269, D:E.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pathak, M.C. et al., Studies on the catalysis and post translational processing of penicillin V acylase. To be published

Release Date

2008-08-26

Peptides

Penicillin acylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
A

D
C

Penicillin acylase