SMTL ID : 2z87.3 (2 other biounits)

Crystal structure of chondroitin polymerase from Escherichia coli strain K4 (K4CP) complexed with UDP-GalNAc and UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x UD2: URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE(Non-covalent)

UD2.1: 21 residues within 4Å: Chain A: P.99, T.100, Y.101, R.103, D.130, G.158, Y.159, L.161, V.164, R.165, D.181, C.182, D.183, M.184, H.299, W.300, G.301, E.303, D.304, H.328 Ligands: MN.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.101 Hydrogen bonds: A:P.99, A:D.130, A:R.165, A:D.181, A:D.181, A:D.181, A:C.182, A:G.301, A:D.304 Water bridges: A:R.103, A:R.103 Salt bridges: A:R.103 pi-Stacking: A:Y.159

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 13 residues within 4Å: Chain A: P.381, A.382, Y.383, D.411, N.438, G.440, I.441, A.444, D.461, S.462, D.463, H.573 Ligands: MN.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.383, A:I.441 Hydrogen bonds: A:Y.383, A:D.411, A:D.411, A:S.462, A:S.462, A:S.462 Water bridges: A:D.461, A:D.461 Salt bridges: A:H.573, A:H.573

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: R.103, D.183, H.328 Ligands: UD2.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.183, A:H.328, H2O.2, H2O.3 MN.4: 3 residues within 4Å: Chain A: D.463, H.573 Ligands: UDP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.463, A:D.463

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osawa, T. et al., Crystal structure of chondroitin polymerase from Escherichia coli K4. Biochem. Biophys. Res. Commun. (2009)

Release Date

2008-09-16

Peptides

Chondroitin synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Chondroitin synthase

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