- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.51 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 5 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x XCC: FE(4)-NI(1)-S(4) CLUSTER(Non-covalent)
XCC.3: 11 residues within 4Å:- Chain A: H.283, C.316, C.317, F.334, C.355, G.469, C.470, C.500, C.550, S.585, K.587
7 PLIP interactions:7 interactions with chain A,- Metal complexes: A:H.283, A:C.317, A:C.355, A:C.470, A:C.500, A:C.550, A:S.585
XCC.15: 10 residues within 4Å:- Chain B: H.283, C.316, C.317, C.355, G.469, C.470, C.500, C.550, S.585, K.587
7 PLIP interactions:7 interactions with chain B,- Metal complexes: B:H.283, B:C.317, B:C.355, B:C.470, B:C.500, B:C.550, B:S.585
- 19 x XE: XENON(Non-covalent)
XE.4: 5 residues within 4Å:- Chain A: C.468, A.580, G.592, W.595, T.602
Ligand excluded by PLIPXE.5: 4 residues within 4Å:- Chain A: V.102, T.593, P.608, F.632
Ligand excluded by PLIPXE.6: 3 residues within 4Å:- Chain A: I.106, A.234, L.620
Ligand excluded by PLIPXE.7: 4 residues within 4Å:- Chain A: V.231, I.235, V.596, L.620
Ligand excluded by PLIPXE.8: 3 residues within 4Å:- Chain A: V.228, I.623
- Chain C: T.31
Ligand excluded by PLIPXE.9: 6 residues within 4Å:- Chain A: L.287, T.374, I.386, Y.388, S.396, A.400
Ligand excluded by PLIPXE.16: 7 residues within 4Å:- Chain B: C.468, S.579, A.580, G.592, W.595, T.602, H.603
Ligand excluded by PLIPXE.17: 5 residues within 4Å:- Chain B: V.102, A.589, T.593, P.608, F.632
Ligand excluded by PLIPXE.18: 2 residues within 4Å:- Chain B: I.106, L.620
Ligand excluded by PLIPXE.19: 4 residues within 4Å:- Chain B: V.231, I.235, V.596, L.620
Ligand excluded by PLIPXE.20: 2 residues within 4Å:- Chain B: I.623
- Chain D: T.31
Ligand excluded by PLIPXE.21: 7 residues within 4Å:- Chain B: L.287, T.374, I.386, Y.388, S.396, A.397, A.400
Ligand excluded by PLIPXE.28: 4 residues within 4Å:- Chain C: F.212, T.213, I.215, V.261
Ligand excluded by PLIPXE.29: 3 residues within 4Å:- Chain C: I.215, A.265, A.269
Ligand excluded by PLIPXE.30: 6 residues within 4Å:- Chain C: V.149, F.229, C.509, C.597
- Ligands: CU1.25, NI.26
Ligand excluded by PLIPXE.34: 3 residues within 4Å:- Chain D: I.215, V.261, A.265
Ligand excluded by PLIPXE.35: 3 residues within 4Å:- Chain D: I.215, V.252, A.265
Ligand excluded by PLIPXE.36: 5 residues within 4Å:- Chain D: M.148, E.156, M.182, Y.221, I.248
Ligand excluded by PLIPXE.37: 4 residues within 4Å:- Chain D: V.149, F.229
- Ligands: CU1.31, NI.32
Ligand excluded by PLIP- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 5 residues within 4Å:- Chain A: K.44, V.45, I.46, A.362, V.363
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.46
GOL.11: 4 residues within 4Å:- Chain A: S.14, E.15, A.16, R.18
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.15, A:E.15, A:R.18
GOL.12: 8 residues within 4Å:- Chain A: P.2, R.3, Q.622, S.625
- Chain C: E.257, H.258, D.259, K.262
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:P.2, A:R.3, A:Q.622, A:S.625, C:H.258
- Water bridges: A:R.3, C:K.262
GOL.13: 6 residues within 4Å:- Chain A: W.95, S.613, D.614, L.615
- Chain C: R.23, H.27
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.95, A:S.613, A:D.614, A:L.615
GOL.22: 4 residues within 4Å:- Chain B: V.45, I.46, A.362, V.363
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:I.46, B:I.46
- Water bridges: B:R.51, A:R.87, A:R.87
GOL.23: 5 residues within 4Å:- Chain B: P.13, S.14, E.15, A.16, R.18
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:P.13, B:E.15, B:R.18
GOL.24: 7 residues within 4Å:- Chain B: T.81, G.612, S.613, D.614, L.615
- Chain D: R.23, H.27
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:D.614, B:L.615, D:H.27
- 2 x CU1: COPPER (I) ION(Non-covalent)
CU1.25: 6 residues within 4Å:- Chain C: C.509, C.595, C.597
- Ligands: NI.26, SF4.27, XE.30
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:C.509, C:C.595, C:C.597
CU1.31: 6 residues within 4Å:- Chain D: C.509, C.595, C.597
- Ligands: NI.32, SF4.33, XE.37
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:C.509, D:C.595, D:C.597
- 2 x NI: NICKEL (II) ION(Non-covalent)
NI.26: 7 residues within 4Å:- Chain C: L.527, C.595, G.596, C.597, F.598
- Ligands: CU1.25, XE.30
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:C.595, C:C.597
NI.32: 7 residues within 4Å:- Chain D: L.527, C.595, G.596, C.597, F.598
- Ligands: CU1.31, XE.37
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:C.595, D:C.597
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Doukov, T.I. et al., Xenon in and at the End of the Tunnel of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase. Biochemistry (2008)
- Release Date
- 2008-03-11
- Peptides
- Carbon monoxide dehydrogenase/acetyl CoA synthase subunit beta: AB
Carbon monoxide dehydrogenase/acetyl CoA synthase subunit alpha: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
MD
N
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.51 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 5 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x XCC: FE(4)-NI(1)-S(4) CLUSTER(Non-covalent)
- 19 x XE: XENON(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CU1: COPPER (I) ION(Non-covalent)
- 2 x NI: NICKEL (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Doukov, T.I. et al., Xenon in and at the End of the Tunnel of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase. Biochemistry (2008)
- Release Date
- 2008-03-11
- Peptides
- Carbon monoxide dehydrogenase/acetyl CoA synthase subunit beta: AB
Carbon monoxide dehydrogenase/acetyl CoA synthase subunit alpha: CD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
MD
N