SMTL ID : 2z8z.1

Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

11 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.253, D.275, D.283, N.284 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.253, A:D.275, A:D.283, H2O.1, H2O.2 CA.2: 4 residues within 4Å: Chain A: K.278, A.281, D.283, D.337 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.278, A:A.281, A:D.283, H2O.1, H2O.3 CA.3: 7 residues within 4Å: Chain A: S.374, S.376, D.378, G.391, R.392, A.393, D.396 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:S.374, A:S.376, A:D.378, A:G.391, A:A.393, A:D.396 CA.4: 6 residues within 4Å: Chain A: G.383, G.385, D.387, D.400, G.402, N.405 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.383, A:G.385, A:D.387, A:D.400, A:G.402 CA.5: 8 residues within 4Å: Chain A: R.392, A.393, G.394, D.396, G.409, G.410, A.411, N.414 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.392, A:G.394, A:D.396, A:G.409, A:A.411 CA.6: 7 residues within 4Å: Chain A: T.494, G.496, D.498, G.511, L.512, D.513, D.516 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.494, A:G.496, A:D.498, A:G.511, A:D.513 CA.7: 8 residues within 4Å: Chain A: A.502, H.503, A.504, G.506, G.521, V.522, G.523, D.525 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.503, A:D.525 CA.8: 8 residues within 4Å: Chain A: L.512, D.513, G.514, D.516, G.529, G.530, A.531, D.534 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:L.512, A:G.514, A:D.516, A:G.529, A:D.534 CA.9: 6 residues within 4Å: Chain A: G.521, G.523, D.525, S.538, G.540, D.543 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.521, A:G.523, A:D.525, A:S.538, A:G.540 CA.10: 6 residues within 4Å: Chain A: G.530, A.531, G.532, D.534, F.551, D.554 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.530, A:G.532, A:D.534, A:F.551, A:D.554, H2O.5 CA.11: 4 residues within 4Å: Chain A: G.541, T.560, N.562, D.563 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.541, A:T.560, A:D.563, H2O.4, H2O.4

2 x ZN: ZINC ION(Non-covalent)

ZN.12: 2 residues within 4Å: Chain A: D.128, H.132 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.128, A:H.132 ZN.13: 2 residues within 4Å: Chain A: H.517, E.537 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.517, A:E.537, A:E.537

1 x PT: PLATINUM (II) ION(Non-covalent)

PT.14: 1 residues within 4Å: Chain A: C.445 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.445, H2O.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Angkawidjaja, C. et al., Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation. FEBS Lett. (2007)

Release Date

2007-10-30

Peptides

Lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipase