SMTL ID : 2z9i.1

Crystal structure of RV0983 from Mycobacterium tuberculosis- Proteolytically active form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x VAL- GLU- GLN- VAL: SVEQV(Non-covalent)

VAL-GLU-GLN-VAL.1: 15 residues within 4Å: Chain A: H.49, D.88, V.142, S.143, T.144, I.164, N.165, P.166, G.167, S.169, S.185, A.186, I.187, T.189, S.199 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.142, A:I.164 Hydrogen bonds: A:H.49, A:D.88, A:G.167, A:S.169, A:S.185, A:I.187, A:I.187, A:S.199 Water bridges: A:T.153 VAL-GLU-GLN-VAL.2: 17 residues within 4Å: Chain B: H.49, D.88, V.142, S.143, T.144, N.165, P.166, G.167, N.168, S.169, S.185, A.186, I.187, T.189, Q.198, S.199, F.206 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.142, B:A.186, B:I.187, B:I.187, B:F.206 Hydrogen bonds: B:H.49, B:D.88, B:G.167, B:S.169, B:S.185, B:I.187, B:I.187, B:Q.198, B:S.199 VAL-GLU-GLN-VAL.3: 17 residues within 4Å: Chain C: H.49, D.88, V.142, S.143, T.144, I.164, N.165, P.166, G.167, N.168, S.169, S.185, A.186, I.187, T.189, L.190, S.199 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:V.142, C:I.164, C:I.187, C:I.187 Hydrogen bonds: C:H.49, C:G.167, C:S.169, C:S.185, C:I.187, C:I.187, C:T.189, C:T.189, C:L.190, C:S.199

3 x GLY- ALA- THR- VAL: GATV(Non-covalent)

GLY-ALA-THR-VAL.4: 7 residues within 4Å: Chain A: S.230, L.231, G.232, V.233, Q.234, V.235, V.284 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.233, A:V.235, A:V.284 Hydrogen bonds: A:L.231, A:G.232, A:V.233, A:V.233, A:V.235, A:V.235, A:R.285 Water bridges: A:R.285, A:R.285 GLY-ALA-THR-VAL.5: 4 residues within 4Å: Chain B: S.230, L.231, V.233, V.284 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.231, B:G.232 GLY-ALA-THR-VAL.6: 8 residues within 4Å: Chain C: S.230, L.231, V.233, Q.234, V.235, L.280, V.281, V.284 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:V.233, C:L.280, C:V.284 Hydrogen bonds: C:L.231, C:G.232, C:V.233, C:V.235, C:V.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mohamedmohaideen, N.N. et al., Structure and function of the virulence-associated high-temperature requirement A of Mycobacterium tuberculosis. Biochemistry (2008)

Release Date

2008-06-10

Peptides

PROBABLE SERINE PROTEASE PEPD: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

PROBABLE SERINE PROTEASE PEPD

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