- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 4 x PXM: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL(Non-covalent)
PXM.3: 13 residues within 4Å:- Chain A: E.67, P.68, V.69, L.72, Y.94, C.141, H.143, T.145, D.170, V.172, S.173, K.196
- Ligands: SO4.1
10 PLIP interactions:1 interactions with chain B, 9 interactions with chain A- Water bridges: B:T.247
- Hydrophobic interactions: A:Y.94, A:V.172
- Hydrogen bonds: A:E.67, A:V.69, A:T.145, A:T.145, A:K.196, A:K.196
- pi-Stacking: A:Y.94
PXM.9: 13 residues within 4Å:- Chain B: E.67, P.68, V.69, L.72, Y.94, C.141, H.143, T.145, D.170, V.172, S.173, K.196
- Ligands: SO4.6
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.94, B:V.172
- Hydrogen bonds: B:E.67, B:V.69, B:T.145, B:T.145, B:K.196, B:K.196
- pi-Stacking: B:Y.94
- Water bridges: A:T.247
PXM.14: 13 residues within 4Å:- Chain C: E.67, P.68, V.69, L.72, Y.94, C.141, H.143, T.145, D.170, V.172, S.173, K.196
- Ligands: SO4.12
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:Y.94, C:V.172
- Hydrogen bonds: C:E.67, C:V.69, C:T.145, C:K.196, C:K.196
- pi-Stacking: C:Y.94
PXM.20: 13 residues within 4Å:- Chain D: E.67, P.68, V.69, L.72, Y.94, C.141, H.143, T.145, D.170, V.172, S.173, K.196
- Ligands: SO4.17
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:Y.94, D:V.172
- Hydrogen bonds: D:E.67, D:V.69, D:T.145, D:K.196, D:K.196
- pi-Stacking: D:Y.94
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 3 residues within 4Å:- Chain A: S.297, D.298, S.299
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.298, A:S.299
GOL.5: 3 residues within 4Å:- Chain A: G.97, Y.100, W.101
No protein-ligand interaction detected (PLIP)GOL.10: 3 residues within 4Å:- Chain B: S.297, D.298, S.299
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.298, B:S.299
GOL.11: 4 residues within 4Å:- Chain B: Y.94, G.97, Y.100, W.101
No protein-ligand interaction detected (PLIP)GOL.15: 3 residues within 4Å:- Chain C: S.297, D.298, S.299
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.298, C:S.299
GOL.16: 3 residues within 4Å:- Chain C: G.97, Y.100, W.101
No protein-ligand interaction detected (PLIP)GOL.21: 3 residues within 4Å:- Chain D: S.297, D.298, S.299
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.298, D:S.299
GOL.22: 4 residues within 4Å:- Chain D: Y.94, G.97, Y.100, W.101
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshikane, Y. et al., Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099. J.Biol.Chem. (2008)
- Release Date
- 2007-11-06
- Peptides
- Aspartate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 4 x PXM: 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yoshikane, Y. et al., Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099. J.Biol.Chem. (2008)
- Release Date
- 2007-11-06
- Peptides
- Aspartate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B