SMTL ID : 2za0.1

Crystal structure of mouse glyoxalase I complexed with methyl-gerfelin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.127, E.173 Chain B: Q.34, E.100 Ligands: MGI.3 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.127, A:E.173, B:E.100 ZN.2: 5 residues within 4Å: Chain A: Q.34, E.100 Chain B: H.127, E.173 Ligands: MGI.4 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.127, B:E.173, A:E.100

2 x MGI: methyl 4-(2,3-dihydroxy-5-methylphenoxy)-2-hydroxy-6-methylbenzoate(Non-covalent)

MGI.3: 15 residues within 4Å: Chain A: H.127, K.157, M.158, L.161, F.163, E.173 Chain B: Q.34, F.63, M.66, F.68, L.70, F.72, F.93, E.100 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.63, B:F.68, B:L.70, B:F.93, A:L.161 MGI.4: 14 residues within 4Å: Chain A: Q.34, F.63, M.66, F.68, L.70, F.93, E.100 Chain B: H.127, M.158, L.161, F.163, E.173, I.184 Ligands: ZN.2 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.63, A:F.68, A:F.68, A:L.70, A:F.93, B:L.161, B:I.184 Hydrogen bonds: A:Q.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawatani, M. et al., The identification of an osteoclastogenesis inhibitor through the inhibition of glyoxalase I. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-08-12

Peptides

Glyoxalase I: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glyoxalase I

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