SMTL ID : 2zah.1 (4 other biounits)

X-ray structure of Melon necrotic spot virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-trimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.87, Q.201 Chain C: D.115, D.120 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Metal complexes: A:D.87, C:D.115, C:D.115, C:D.120 CA.3: 4 residues within 4Å: Chain A: D.115, D.120 Chain B: D.87, Q.201 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Metal complexes: B:D.87, A:D.115, A:D.115, A:D.120 CA.4: 5 residues within 4Å: Chain B: D.117, D.120 Chain C: D.87, D.159, Q.201 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Metal complexes: B:D.117, B:D.120, B:D.120, C:D.87, C:D.159 CA.5: 4 residues within 4Å: Chain B: D.115, D.120 Chain C: D.87, Q.201 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Metal complexes: B:D.115, B:D.115, B:D.120, C:D.87

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wada, Y. et al., X-ray structure of Melon necrotic spot virus. Acta Crystallogr.,Sect.F (2008)

Release Date

2008-10-07

Peptides

Coat protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Coat protein

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