SMTL ID : 2zan.1

Crystal structure of mouse SKD1/VPS4B ATP-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.181, D.234 Ligands: ATP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.181

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 19 residues within 4Å: Chain A: D.135, V.136, A.137, L.139, P.175, P.176, G.177, T.178, G.179, K.180, S.181, Y.182, N.279, M.309, H.313, G.338, A.339, S.342 Ligands: MG.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:A.137, A:A.137, A:G.177, A:T.178, A:G.179, A:G.179, A:K.180, A:S.181, A:Y.182, A:N.279, A:S.342 Salt bridges: A:K.180, A:K.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inoue, M. et al., Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B. Traffic (2008)

Release Date

2008-10-07

Peptides

Vacuolar protein sorting-associating protein 4B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vacuolar protein sorting-associating protein 4B

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