SMTL ID : 2zb7.1

Crystal structure of human 15-ketoprostaglandin delta-13-reductase in complex with NADPH and nicotinamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 28 residues within 4Å: Chain A: P.56, M.141, T.145, G.171, A.172, C.173, C.193, G.194, K.198, Y.214, N.237, V.238, I.242, C.259, G.260, Q.261, I.262, S.263, Y.265, F.293, L.294, V.295, M.338, M.339, G.341, N.343, G.345 Ligands: NCA.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:T.145 Hydrogen bonds: A:A.172, A:C.173, A:G.194, A:K.198, A:Y.214, A:N.237, A:C.259, A:I.262, A:Y.265, A:V.295, A:G.341, A:G.341, A:N.343, A:N.343 Water bridges: A:D.55, A:D.55, A:Y.57, A:G.171, A:G.174, A:K.215, A:S.263, A:Y.271, A:M.339 Salt bridges: A:K.198

1 x NCA: NICOTINAMIDE(Non-covalent)

NCA.2: 6 residues within 4Å: Chain A: Y.57, I.71, M.141, L.294, L.296 Ligands: NDP.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.57, A:Y.57 Water bridges: A:Y.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y.H. et al., Structural basis for catalytic and inhibitory mechanisms of human prostaglandin reductase PTGR2. Structure (2008)

Release Date

2008-09-30

Peptides

Prostaglandin reductase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prostaglandin reductase 2

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