SMTL ID : 2zbc.2 (1 other biounit)

Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-octamer

Ligands

8 x ILE: ISOLEUCINE(Non-covalent)

ILE.1: 13 residues within 4Å: Chain A: K.53, V.56, T.57, R.61, T.69, L.70, T.71 Chain H: E.15, V.34, Y.35, G.36, Y.38, D.39 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain H, Hydrophobic interactions: A:K.53, H:Y.35, H:D.39 Hydrogen bonds: A:T.69, A:T.71, H:G.36, H:G.36, H:D.39 ILE.2: 13 residues within 4Å: Chain B: K.53, V.56, T.57, R.61, T.69, L.70, T.71 Chain G: E.15, V.34, Y.35, G.36, Y.38, D.39 12 PLIP interactions: 6 interactions with chain G, 6 interactions with chain B, Hydrophobic interactions: G:E.15, G:Y.35, G:Y.35, G:D.39, B:K.53, B:V.56 Hydrogen bonds: G:G.36, G:G.36, B:T.69, B:T.71, B:T.71 Salt bridges: B:R.61 ILE.3: 13 residues within 4Å: Chain B: E.15, V.34, Y.35, G.36, Y.38, D.39 Chain D: K.53, V.56, T.57, R.61, T.69, L.70, T.71 10 PLIP interactions: 4 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:K.53, B:E.15, B:Y.35, B:Y.35, B:D.39 Hydrogen bonds: D:T.69, D:T.71, B:G.36, B:G.36 Salt bridges: D:R.61 ILE.4: 13 residues within 4Å: Chain A: E.15, V.34, Y.35, G.36, Y.38, D.39 Chain C: K.53, V.56, T.57, R.61, T.69, L.70, T.71 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain A, Hydrophobic interactions: C:K.53, C:V.56, A:E.15, A:Y.35, A:D.39 Hydrogen bonds: C:T.69, C:T.71, A:G.36, A:G.36 ILE.5: 13 residues within 4Å: Chain D: E.15, V.34, Y.35, G.36, Y.38, D.39 Chain E: K.53, V.56, T.57, R.61, T.69, L.70, T.71 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain E Hydrophobic interactions: D:Y.35, D:D.39, E:K.53 Hydrogen bonds: D:G.36, D:G.36, E:T.69, E:T.69, E:T.71, E:T.71 ILE.6: 13 residues within 4Å: Chain C: E.15, V.34, Y.35, G.36, Y.38, D.39 Chain F: K.53, V.56, T.57, R.61, T.69, L.70, T.71 13 PLIP interactions: 6 interactions with chain F, 7 interactions with chain C, Hydrophobic interactions: F:K.53, F:V.56, C:E.15, C:Y.35, C:Y.35, C:D.39 Hydrogen bonds: F:T.69, F:T.69, F:T.71, C:G.36, C:G.36, C:D.39 Salt bridges: F:R.61 ILE.7: 13 residues within 4Å: Chain F: E.15, V.34, Y.35, G.36, Y.38, D.39 Chain H: K.53, V.56, T.57, R.61, T.69, L.70, T.71 13 PLIP interactions: 6 interactions with chain H, 7 interactions with chain F Hydrophobic interactions: H:K.53, F:E.15, F:Y.35, F:Y.35, F:D.39 Hydrogen bonds: H:T.69, H:T.69, H:T.71, H:T.71, F:G.36, F:G.36, F:D.39 Salt bridges: H:R.61 ILE.8: 13 residues within 4Å: Chain E: E.15, V.34, Y.35, G.36, Y.38, D.39 Chain G: K.53, V.56, T.57, R.61, T.69, L.70, T.71 12 PLIP interactions: 6 interactions with chain E, 6 interactions with chain G Hydrophobic interactions: E:E.15, E:Y.35, E:D.39, G:K.53, G:V.56 Hydrogen bonds: E:G.36, E:G.36, E:D.39, G:T.69, G:T.69, G:T.71, G:T.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyazono, K. et al., Crystal structure of STS042, a stand-alone RAM module protein, from hyperthermophilic archaeon Sulfolobus tokodaii strain7. Proteins (2008)

Release Date

2008-03-11

Peptides

83aa long hypothetical transcriptional regulator asnC: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

E
E

F
F

G
G

H
H

83aa long hypothetical transcriptional regulator asnC

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