- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.1: 9 residues within 4Å:- Chain A: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.236, A:F.236
- Hydrogen bonds: A:D.27, A:K.84
- Water bridges: A:D.27
MPD.2: 9 residues within 4Å:- Chain B: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.236
- Hydrogen bonds: B:D.27, B:K.84
MPD.3: 9 residues within 4Å:- Chain C: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:F.236
- Hydrogen bonds: C:D.27, C:K.84
MPD.4: 9 residues within 4Å:- Chain D: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:F.236
- Hydrogen bonds: D:D.27, D:K.84
MPD.5: 9 residues within 4Å:- Chain E: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:F.236, E:F.236
- Hydrogen bonds: E:D.27, E:K.84
- Water bridges: E:D.27
MPD.6: 9 residues within 4Å:- Chain F: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:F.236
- Hydrogen bonds: F:D.27, F:K.84
MPD.7: 9 residues within 4Å:- Chain G: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain G- Hydrophobic interactions: G:F.236
- Hydrogen bonds: G:D.27, G:K.84
MPD.8: 9 residues within 4Å:- Chain H: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain H- Hydrophobic interactions: H:F.236
- Hydrogen bonds: H:D.27, H:K.84
MPD.9: 9 residues within 4Å:- Chain I: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
5 PLIP interactions:5 interactions with chain I- Hydrophobic interactions: I:F.236, I:F.236
- Hydrogen bonds: I:D.27, I:K.84
- Water bridges: I:D.27
MPD.10: 9 residues within 4Å:- Chain J: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain J- Hydrophobic interactions: J:F.236
- Hydrogen bonds: J:D.27, J:K.84
MPD.11: 9 residues within 4Å:- Chain K: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain K- Hydrophobic interactions: K:F.236
- Hydrogen bonds: K:D.27, K:K.84
MPD.12: 9 residues within 4Å:- Chain L: D.27, M.46, K.84, D.105, R.150, G.216, F.236, V.237, G.238
3 PLIP interactions:3 interactions with chain L- Hydrophobic interactions: L:F.236
- Hydrogen bonds: L:D.27, L:K.84
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Manzoku, M. et al., Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8. To be Published
- Release Date
- 2007-12-18
- Peptides
- Pyridoxal biosynthesis lyase pdxS: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Manzoku, M. et al., Crystal structure of pyridoxine biosynthesis protein from Thermus thermophilus HB8. To be Published
- Release Date
- 2007-12-18
- Peptides
- Pyridoxal biosynthesis lyase pdxS: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D