SMTL ID : 2zch.1

Crystal structure of human prostate specific antigen complexed with an activating antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)

NDG.1: 2 residues within 4Å: Chain A: N.45 Ligands: NDG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.45, A:N.45 NDG.2: 1 residues within 4Å: Ligands: NDG.1 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: H.32 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 5 residues within 4Å: Chain A: W.228 Chain C: Y.33, R.50, Y.101, E.107 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Salt bridges: A:K.227, C:R.50 Hydrogen bonds: C:Y.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, S. et al., Crystal structure of a ternary complex between human prostate-specific antigen, its substrate acyl intermediate and an activating antibody. J.Mol.Biol. (2008)

Release Date

2008-01-29

Peptides

Prostate-specific antigen: A
monoclonal antibody 8G8F5 Fab: B
monoclonal antibody 8G8F5 Fab: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
L

C
H

Prostate-specific antigen

monoclonal antibody 8G8F5 Fab

monoclonal antibody 8G8F5 Fab

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