SMTL ID : 2zcv.1

Crystal structure of NADPH-dependent quinone oxidoreductase QOR2 complexed with NADPH from escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x CU: COPPER (II) ION(Non-covalent)

CU.1: 2 residues within 4Å: Chain A: E.276, H.280 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.276, A:H.280

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.18, A.176, R.180, H.269 Ligands: SO4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.269 Salt bridges: A:R.180 SO4.3: 6 residues within 4Å: Chain A: A.172, D.173, A.176, I.267, H.269 Ligands: SO4.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.172 Salt bridges: A:H.269

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.4: 18 residues within 4Å: Chain A: G.6, T.8, G.9, Q.10, L.11, R.33, Y.53, I.72, S.73, S.74, S.75, Q.83, N.137, G.138, W.139, Y.140, N.143, R.171 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.140 Hydrogen bonds: A:T.8, A:T.8, A:Q.10, A:Q.10, A:L.11, A:R.33, A:Y.53, A:S.75, A:Q.83, A:G.138, A:Y.140, A:Y.140, A:N.143 Water bridges: A:G.6, A:G.9, A:G.12, A:G.54, A:G.54, A:S.73 Salt bridges: A:R.33, A:R.171 pi-Cation interactions: A:R.33, A:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, I.K. et al., Crystal structure of a new type of NADPH-dependent quinone oxidoreductase (QOR2) from Escherichia coli. J.Mol.Biol. (2008)

Release Date

2008-05-27

Peptides

Uncharacterized oxidoreductase ytfG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized oxidoreductase ytfG

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