SMTL ID : 2zdc.1

Crystal structure of dUTPase from Sulfolobus tokodaii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.104, R.107, N.108 Chain C: K.61 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain A Salt bridges: C:K.61, A:R.107 Hydrogen bonds: A:T.104, A:N.108, A:N.108 SO4.3: 4 residues within 4Å: Chain A: K.61 Chain B: T.104, R.107, N.108 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.61, B:R.107 Hydrogen bonds: B:N.108 SO4.4: 4 residues within 4Å: Chain B: K.61 Chain C: T.104, R.107, N.108 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:T.104, C:N.108 Water bridges: C:R.107, C:R.107 Salt bridges: C:R.107, B:K.61

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 9 residues within 4Å: Chain A: N.78, T.130, V.132 Chain B: N.78, T.130, V.132 Chain C: N.78, T.130, V.132 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:N.78, C:N.78, B:N.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanagawa, M. et al., Crystal structure of dUTPase from Sulfolobus tokodaii. To be Published

Release Date

2008-05-27

Peptides

167aa long hypothetical dUTPase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

167aa long hypothetical dUTPase

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