SMTL ID : 2zdi.1

Crystal structure of Prefoldin from Pyrococcus horikoshii OT3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-4-2-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.91 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.91 SO4.2: 1 residues within 4Å: Chain B: R.91 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.91 SO4.3: 5 residues within 4Å: Chain C: S.85, G.87, S.88, G.89, Y.90 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.85, C:S.85, C:G.87, C:S.88, C:G.89, C:Y.90 SO4.4: 1 residues within 4Å: Chain D: R.91 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.91 SO4.5: 1 residues within 4Å: Chain E: R.91 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:R.91 SO4.6: 5 residues within 4Å: Chain F: S.85, G.87, S.88, G.89, Y.90 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:S.85, F:S.85, F:G.87, F:S.88, F:G.89, F:Y.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohtaki, A. et al., Structure and molecular dynamics simulation of archaeal prefoldin: the molecular mechanism for binding and recognition of nonnative substrate proteins. J.Mol.Biol. (2008)

Release Date

2008-02-05

Peptides

Prefoldin subunit beta: ABDE
Prefoldin subunit alpha: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
A

E
B

C
C

F
C

Prefoldin subunit beta

Prefoldin subunit alpha