SMTL ID : 2ze6.1

Crystal Structure of adenosine phosphate-isopentenyltransferase complexed with substrate analog, DMASPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x DST: DIMETHYLALLYL S-THIOLODIPHOSPHATE(Non-covalent)

DST.1: 13 residues within 4Å: Chain A: P.9, T.10, C.11, S.12, G.13, K.14, T.15, D.33, Q.36, S.45, R.138, Y.211 Ligands: AMP.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.211 Hydrogen bonds: A:C.11, A:S.12, A:G.13, A:K.14, A:K.14, A:K.14, A:T.15, A:T.15, A:G.98, A:R.138, A:R.138 Water bridges: A:G.13, A:D.16, A:Q.36, A:Q.36 Salt bridges: A:K.14, A:R.138

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 14 residues within 4Å: Chain A: D.33, R.34, V.35, S.45, G.98, S.99, I.100, S.101, D.171, I.172, D.173, R.176, H.214 Ligands: DST.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.34, A:S.45, A:S.99, A:S.99, A:I.100, A:S.101, A:D.171, A:D.173, A:D.173, A:R.176 Water bridges: A:V.35 Salt bridges: A:R.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugawara, H. et al., Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-02-05

Peptides

Isopentenyl transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isopentenyl transferase

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