SMTL ID : 2ze9.1

Crystal structure of H168A mutant of phospholipase D from Streptomyces antibioticus, as a complex with phosphatidylcholine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 9 residues within 4Å: Chain A: A.122, H.127, S.156, M.157, T.158, P.231, A.232, K.233, W.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.232 pi-Cation interactions: A:W.235, A:W.235

1 x PD7: (2R)-3-(phosphonooxy)propane-1,2-diyl diheptanoate(Non-covalent)

PD7.2: 16 residues within 4Å: Chain A: L.88, A.123, Y.126, W.166, A.168, K.170, N.185, P.345, L.346, G.381, H.442, K.444, N.459, Y.461, A.463, L.465 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.88, A:Y.126, A:W.166, A:L.346 Hydrogen bonds: A:N.185, A:N.459, A:N.459 Water bridges: A:Q.387, A:H.442, A:K.444, A:K.444, A:W.464 Salt bridges: A:K.170, A:H.442, A:K.444

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, A. et al., Crystal structure of phospholipase D from streptomyces antibioticus. To be Published

Release Date

2007-12-25

Peptides

Phospholipase D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phospholipase D