SMTL ID : 2zg3.1

Crystal Structure of Two N-terminal Domains of Native Siglec-5 in Complex with 3'-Sialyllactose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-SIA.1: 8 residues within 4Å: Chain A: Y.2, I.47, Y.49, R.100, K.108, Y.109, S.110, Q.112 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.49, A:Y.49, A:K.108, A:S.110 Hydrophobic interactions: A:Y.109 Water bridges: A:Q.112, A:Q.112 Salt bridges: A:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhuravleva, M.A. et al., Structural implications of Siglec-5-mediated sialoglycan recognition. J.Mol.Biol. (2008)

Release Date

2008-02-05

Peptides

Sialic acid-binding Ig-like lectin 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sialic acid-binding Ig-like lectin 5

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