SMTL ID : 2zgw.1

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with Adenosine and Biotin, Mutations R48A and K111A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x ADN: ADENOSINE(Non-covalent)

ADN.1: 8 residues within 4Å: Chain A: R.51, K.52, W.53, E.54, A.111, N.131, P.137, A.140 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.52, A:E.54, A:N.131, A:N.131 Water bridges: A:R.51, A:N.138 pi-Stacking: A:W.53, A:W.53 ADN.3: 8 residues within 4Å: Chain B: K.52, W.53, E.54, A.111, N.131, P.137, A.140 Ligands: BTN.4 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.54, B:N.131, B:N.131 Water bridges: B:D.104, B:D.104 pi-Stacking: B:W.53, B:W.53

2 x BTN: BIOTIN(Non-covalent)

BTN.2: 19 residues within 4Å: Chain A: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, A.48, R.51, W.53, L.62, S.63, N.103, D.104, G.114, V.115, L.116, I.128, G.129 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.53, A:W.53, A:L.116 Hydrogen bonds: A:T.22, A:T.22, A:N.23, A:Q.42, A:H.46, A:H.46, A:A.48, A:N.103 Salt bridges: A:R.51 BTN.4: 19 residues within 4Å: Chain B: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, A.48, W.53, L.62, S.63, N.103, D.104, G.114, V.115, L.116, I.128, G.129 Ligands: ADN.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.53, B:W.53 Hydrogen bonds: B:T.22, B:T.22, B:N.23, B:Q.42, B:H.46, B:H.46, B:A.48, B:N.103, B:V.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Protein biotinylation visualized by a complex structure of biotin protein ligase with a substrate. J.Biol.Chem. (2008)

Release Date

2008-02-05

Peptides

biotin--[acetyl-CoA-carboxylase] ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

biotin--[acetyl-CoA-carboxylase] ligase

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