SMTL ID : 2zhz.1

Crystal structure of a pduO-type ATP:cobalamin adenosyltransferase from Burkholderia thailandensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: R.129, N.153, D.157 Chain B: K.28 Ligands: ATP.4 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: N.153 Ligands: ATP.5 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: A.34, D.38, R.130, S.134 Chain C: R.130, R.133 Ligands: GOL.6, GOL.7 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain A Hydrogen bonds: C:R.133, A:D.38, A:R.130, A:S.134 Water bridges: A:D.38, A:R.133 GOL.6: 7 residues within 4Å: Chain A: R.130, R.133 Chain B: A.34, D.38, R.130 Ligands: GOL.2, GOL.7 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.130, A:R.133 Water bridges: A:R.133 GOL.7: 8 residues within 4Å: Chain B: R.130, R.133 Chain C: A.34, D.38, R.130, S.134 Ligands: GOL.2, GOL.6 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:R.133, C:R.130 Water bridges: B:R.133

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.4: 15 residues within 4Å: Chain A: R.129, E.132, R.133, N.153, D.157 Chain B: R.11, T.12, G.13, T.17, T.18, G.19, K.28, I.33, G.37 Ligands: MG.1 14 PLIP interactions: 9 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:T.12, B:G.13, B:T.17, B:T.18, B:G.19, A:R.129, A:R.129, A:R.133, A:D.157 Water bridges: B:G.19 Salt bridges: B:R.11, B:K.28, B:K.28, A:R.129 ATP.5: 14 residues within 4Å: Chain B: R.129, E.132, R.133, N.153 Chain C: R.11, T.12, G.13, T.17, T.18, G.19, K.28, I.33, G.37 Ligands: MG.3 22 PLIP interactions: 12 interactions with chain C, 10 interactions with chain B Hydrogen bonds: C:G.13, C:T.17, C:T.18, C:G.19, B:R.129, B:R.129, B:R.133 Water bridges: C:R.11, C:R.11, C:T.12, C:G.19, C:G.19, B:R.129, B:R.129, B:R.129, B:R.129 Salt bridges: C:R.11, C:K.28, C:K.28, B:R.129 pi-Cation interactions: B:R.129, B:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moon, J.H. et al., Crystal structure of a PduO-type ATP:cobalamin adenosyltransferase from Burkholderia thailandensis. Proteins (2008)

Release Date

2008-07-29

Peptides

ATP:cob(I)alamin adenosyltransferase, putative: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

ATP:cob(I)alamin adenosyltransferase, putative

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