SMTL ID : 2zi6.2 (2 other biounits)

C4S dCK variant of dCK in complex with D-dA+UDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

2 x 3D1: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol(Non-covalent)

3D1.1: 12 residues within 4Å: Chain A: I.49, E.72, V.74, L.101, Y.105, F.115, Q.116, R.147, D.152, F.156, I.219, Y.223 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.49, A:F.156 Hydrogen bonds: A:Y.105, A:Y.105, A:Q.116, A:D.152 pi-Stacking: A:F.115, A:F.156, A:F.156 3D1.2: 12 residues within 4Å: Chain B: I.49, E.72, V.74, L.101, Y.105, F.115, Q.116, R.147, D.152, F.156, I.219, Y.223 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.49, B:F.156 Hydrogen bonds: B:Y.105, B:Q.116, B:D.152, B:D.152 Water bridges: B:E.72, B:E.72 pi-Stacking: B:F.115, B:F.156, B:F.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sabini, E. et al., Structural basis for substrate promiscuity of dCK. J.Mol.Biol. (2008)

Release Date

2008-04-22

Peptides

Deoxycytidine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Deoxycytidine kinase

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