- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x YLY: (2R)-2-AMINO-6-({[(2S,3R)-3-METHYLPYRROLIDIN-2-YL]CARBONYL}AMINO)HEXANOYL [(2S,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL HYDROGEN (R)-PHOSPHATE(Non-covalent)
YLY.11: 27 residues within 4Å:- Chain A: M.137, A.139, L.142, Y.143, R.167, E.169, E.174, H.175, L.176, F.179, M.181, N.183, F.184, C.185, Y.221, E.233, L.234, S.235, S.236, V.238, W.254, G.256, A.257, G.258, G.260, R.263
- Ligands: POP.12
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:L.142, A:Y.143, A:V.238
- Hydrogen bonds: A:E.169, A:L.176, A:N.183, A:Y.221, A:Y.221, A:Y.221, A:Y.221, A:E.233, A:S.236, A:G.258, A:G.260, A:R.263
- Water bridges: A:L.138, A:A.139, A:S.236, A:S.236
- Salt bridges: A:R.167, A:R.167
- pi-Stacking: A:F.179, A:F.179
- pi-Cation interactions: A:R.263
YLY.23: 27 residues within 4Å:- Chain B: M.137, A.139, L.142, Y.143, R.167, E.169, E.174, H.175, L.176, F.179, M.181, N.183, F.184, C.185, Y.221, E.233, L.234, S.235, S.236, V.238, W.254, G.256, A.257, G.258, G.260, R.263
- Ligands: POP.24
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:L.142, B:Y.143, B:V.238
- Hydrogen bonds: B:E.169, B:L.176, B:N.183, B:Y.221, B:Y.221, B:Y.221, B:Y.221, B:E.233, B:S.236, B:G.258, B:G.260, B:R.263
- Water bridges: B:L.138, B:A.139, B:S.236, B:S.236
- Salt bridges: B:R.167, B:R.167
- pi-Stacking: B:F.179, B:F.179
- pi-Cation interactions: B:R.263
- 2 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.12: 6 residues within 4Å:- Chain A: R.167, H.175, E.233, R.263
- Ligands: EDO.6, YLY.11
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.233
- Water bridges: A:R.167
- Salt bridges: A:R.167, A:H.175, A:R.263
POP.24: 6 residues within 4Å:- Chain B: R.167, H.175, E.233, R.263
- Ligands: EDO.18, YLY.23
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:E.233
- Water bridges: B:R.167
- Salt bridges: B:R.167, B:H.175, B:R.263
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kavran, J.M. et al., Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation. Proc.Natl.Acad.Sci.Usa (2007)
- Release Date
- 2008-03-04
- Peptides
- Pyrrolysyl-tRNA synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x YLY: (2R)-2-AMINO-6-({[(2S,3R)-3-METHYLPYRROLIDIN-2-YL]CARBONYL}AMINO)HEXANOYL [(2S,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL HYDROGEN (R)-PHOSPHATE(Non-covalent)
- 2 x POP: PYROPHOSPHATE 2-(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kavran, J.M. et al., Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation. Proc.Natl.Acad.Sci.Usa (2007)
- Release Date
- 2008-03-04
- Peptides
- Pyrrolysyl-tRNA synthetase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A