SMTL ID : 2zj5.1 (1 other biounit)

Archaeal DNA helicase Hjm complexed with ADP in form 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.249, R.344, T.385 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.385 Salt bridges: A:K.249, A:R.344 SO4.2: 3 residues within 4Å: Chain A: M.246, R.247, R.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.247, A:R.248 Water bridges: A:R.252 Salt bridges: A:R.248 SO4.3: 3 residues within 4Å: Chain A: R.634, K.638, Y.639 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.639 Salt bridges: A:R.634, A:K.638 SO4.4: 3 residues within 4Å: Chain A: K.108, H.131, K.488 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.108, A:H.131, A:K.488 SO4.5: 5 residues within 4Å: Chain A: R.247, H.301, A.302, T.327, T.329 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.302, A:T.329, A:T.329 Salt bridges: A:R.247

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.6: 10 residues within 4Å: Chain A: I.21, S.23, F.24, Y.25, Q.28, T.48, G.51, K.52, T.53, L.54 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.23, A:Y.25, A:Q.28, A:K.52, A:T.53, A:L.54 Water bridges: A:Y.25, A:T.53, A:K.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oyama, T. et al., Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm. Bmc Struct.Biol. (2009)

Release Date

2009-02-10

Peptides

Putative ski2-type helicase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative ski2-type helicase

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