SMTL ID : 2zji.1

Crystal structure of the human BACE1 catalytic domain in complex with N-[1-(2,6-dimethoxy-benzyl)-piperidin-4-yl]-4-mercapto-butyramide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x F1I: N-[1-(2,6-dimethoxybenzyl)piperidin-4-yl]-4-sulfanylbutanamide(Non-covalent)

F1I.1: 15 residues within 4Å: Chain A: L.50, D.52, G.54, S.55, Y.91, W.96, F.128, I.138, I.246, D.248, G.250, T.251, R.255, C.349, V.352 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.246, A:V.352 Hydrogen bonds: A:D.248 Water bridges: A:R.255 Salt bridges: A:D.52 pi-Stacking: A:Y.91, A:F.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W. et al., Fragment-based discovery of novel BACE1 inhibitors using Tethering technology. To be Published

Release Date

2009-01-20

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1