SMTL ID : 2zjl.1

Crystal structure of the human BACE1 catalytic domain in complex with N-[1-(5-bromo-2,3-dimethoxy-benzyl)-piperidin-4-yl]-4-mercapto-butyramide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x F1L: N-[1-(5-bromo-2,3-dimethoxybenzyl)piperidin-4-yl]-4-sulfanylbutanamide(Non-covalent)

F1L.1: 17 residues within 4Å: Chain A: Q.32, L.50, V.51, D.52, G.54, Y.91, F.128, I.130, I.138, Y.218, I.246, D.248, G.250, T.251, R.255, T.349, C.352 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.50, A:D.52, A:I.138, A:Y.218, A:I.246 Hydrogen bonds: A:D.248 Salt bridges: A:D.52, A:D.248 Halogen bonds: A:V.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W. et al., Fragment-based discovery of novel BACE1 inhibitors using Tethering technology. To be Published

Release Date

2009-01-20

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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