SMTL ID : 2zjm.1

Crystal structure of the human BACE1 catalytic domain in complex with N-[1-(5-chloro-2-isopropoxy-3-methoxy-benzyl)-piperidin-4-yl]-2-(4-sulfamoyl-phenoxy)-acetamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x F1M: N-{1-[5-chloro-3-methoxy-2-(1-methylethoxy)benzyl]piperidin-4-yl}-2-(4-sulfamoylphenoxy)acetamide(Non-covalent)

F1M.1: 22 residues within 4Å: Chain A: Q.32, G.33, L.50, V.51, D.52, G.54, Y.91, T.92, Q.93, F.128, W.135, I.138, Y.218, I.246, D.248, G.250, T.251, R.255, S.347, S.348, T.349, V.352 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:D.52, A:T.92, A:F.128, A:F.128, A:W.135, A:I.138, A:T.349, A:V.352 Hydrogen bonds: A:D.248, A:S.348, A:S.348, A:T.349 Salt bridges: A:D.52, A:D.248 Halogen bonds: A:V.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W. et al., Fragment-based discovery of novel BACE1 inhibitors using Tethering technology. To be Published

Release Date

2009-01-20

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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