SMTL ID : 2zjn.1

Crystal structure of the human BACE1 catalytic domain in complex with N-[1-(5-chloro-2-isopropoxy-3-methoxy-benzyl)-piperidin-4-yl]-2-(2-methyl-4-sulfamoyl-phenoxy)-acetamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x F1N: N-{1-[5-chloro-3-methoxy-2-(1-methylethoxy)benzyl]piperidin-4-yl}-2-(2-methyl-4-sulfamoylphenoxy)acetamide(Non-covalent)

F1N.1: 23 residues within 4Å: Chain A: Q.32, L.50, V.51, D.52, G.54, S.55, Y.91, F.128, I.130, W.135, I.138, Y.218, K.244, I.246, D.248, S.249, G.250, T.251, R.255, S.347, S.348, T.349, V.352 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.50, A:F.128, A:W.135, A:I.138, A:T.349, A:V.352 Hydrogen bonds: A:D.248, A:S.348, A:S.348, A:T.349 Salt bridges: A:D.52 Halogen bonds: A:V.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, W. et al., Fragment-based discovery of novel BACE1 inhibitors using Tethering technology. To be Published

Release Date

2009-01-20

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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