SMTL ID : 2zks.1

Structural insights into the proteolytic machinery of apoptosis-inducing Granzyme M

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ACE- LYS- VAL- PRO- LEU- 0QE: hGzmM inhibitor(Non-covalent)

ACE-LYS-VAL-PRO-LEU-0QE.1: 15 residues within 4Å: Chain A: H.41, V.80, P.81, A.82, L.83, W.157, S.160, G.180, S.182, L.198, S.199, F.200, S.201, S.202, R.203 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.80, A:L.83, A:W.157, A:L.198, A:F.200, A:F.200, A:R.203 Hydrogen bonds: A:S.160, A:G.180, A:S.182, A:S.182, A:S.199, A:S.201, A:S.201

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.51, H.67 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.51, A:H.67 SO4.3: 5 residues within 4Å: Chain A: T.128, S.135, R.136, V.137, R.139 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.136 Salt bridges: A:R.136, A:R.139 SO4.4: 2 residues within 4Å: Chain A: K.34, Q.91 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.91 Water bridges: A:K.69, A:K.69 Salt bridges: A:K.34 SO4.5: 2 residues within 4Å: Chain A: G.189, K.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.190 Water bridges: A:G.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, L. et al., Structural basis for proteolytic specificity of the human apoptosis-inducing granzyme M. J.Immunol. (2009)

Release Date

2009-03-31

Peptides

Granzyme M: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Granzyme M

Related Entries With Identical Sequence