- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
ACA.3: 10 residues within 4Å:- Chain A: A.112, Y.170, Y.215, F.317, W.331, I.343, I.345, Y.370, H.375
- Ligands: ACA.4
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.331, A:I.343, A:Y.370
- Hydrogen bonds: A:Y.170, A:I.345, A:Y.370
- Salt bridges: A:H.375
ACA.4: 11 residues within 4Å:- Chain A: M.111, A.112, Y.170, W.186, Y.215, S.217, F.264, H.266, G.344, I.345
- Ligands: ACA.3
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:A.112, A:Y.170, A:W.186
- Hydrogen bonds: A:A.112, A:H.266, A:I.345
- Water bridges: A:S.217
ACA.14: 10 residues within 4Å:- Chain B: A.112, Y.170, Y.215, F.317, W.331, I.343, I.345, Y.370, H.375
- Ligands: ACA.15
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:W.331, B:I.343, B:Y.370
- Hydrogen bonds: B:Y.170, B:Y.215, B:I.345
- Salt bridges: B:H.375
ACA.15: 11 residues within 4Å:- Chain B: M.111, A.112, Y.170, W.186, Y.215, S.217, F.264, H.266, G.344, I.345
- Ligands: ACA.14
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:A.112, B:Y.170, B:W.186
- Hydrogen bonds: B:A.112, B:H.266, B:I.345
- Water bridges: B:S.217
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.5: 7 residues within 4Å:- Chain A: R.99, G.101
- Chain B: Y.13, P.30, R.33, W.34, H.38
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Water bridges: A:R.99, A:R.99
- Salt bridges: A:R.99, B:H.38
MES.6: 6 residues within 4Å:- Chain A: Q.69, L.70, P.71, D.72, R.76, D.384
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.72
- Salt bridges: A:R.76, A:D.384
MES.16: 7 residues within 4Å:- Chain A: Y.13, P.30, R.33, W.34, H.38
- Chain B: R.99, G.101
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.99, B:R.99
- Salt bridges: B:R.99, A:H.38
MES.17: 6 residues within 4Å:- Chain B: Q.69, L.70, P.71, D.72, R.76, D.384
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.72
- Salt bridges: B:R.76, B:D.384
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 4 residues within 4Å:- Chain A: G.211, E.212, E.310, A.311
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.310
GOL.8: 4 residues within 4Å:- Chain A: D.106, R.107, R.251
- Chain B: A.37
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.107, A:R.107, A:R.107, A:R.107, A:R.251, A:R.251
- Water bridges: B:D.252
GOL.9: 8 residues within 4Å:- Chain A: Y.170, V.171, P.173, Q.178, R.187
- Chain B: D.24, Q.27, E.28
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.187, A:R.187, B:E.28
- Water bridges: B:E.28
GOL.10: 3 residues within 4Å:- Chain A: T.91, V.93, R.274
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.91, A:R.274
- Water bridges: A:R.278
GOL.11: 7 residues within 4Å:- Chain A: D.159, Q.161, G.306, G.307, S.308, T.327, R.328
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.161, A:S.308, A:T.327, A:R.328, A:R.328
GOL.18: 4 residues within 4Å:- Chain B: G.211, E.212, E.310, A.311
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.310
GOL.19: 4 residues within 4Å:- Chain A: A.37
- Chain B: D.106, R.107, R.251
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:D.106, B:R.107, B:R.107, B:R.107, B:R.107, B:R.251, B:R.251
- Water bridges: A:D.252, A:D.252
GOL.20: 8 residues within 4Å:- Chain A: D.24, Q.27, E.28
- Chain B: Y.170, V.171, P.173, Q.178, R.187
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.187, B:R.187, A:E.28, A:E.28
- Water bridges: A:E.28
GOL.21: 3 residues within 4Å:- Chain B: T.91, V.93, R.274
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.91, B:R.274
- Water bridges: B:R.278
GOL.22: 7 residues within 4Å:- Chain B: D.159, Q.161, G.306, G.307, S.308, T.327, R.328
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.161, B:S.308, B:T.327, B:R.328, B:R.328
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ohki, T. et al., Two alternative modes for optimizing nylon-6 byproduct hydrolytic activity from a carboxylesterase with a beta-lactamase fold: X-ray crystallographic analysis of directly evolved 6-aminohexanoate-dimer hydrolase. Protein Sci. (2009)
- Release Date
- 2009-04-14
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ohki, T. et al., Two alternative modes for optimizing nylon-6 byproduct hydrolytic activity from a carboxylesterase with a beta-lactamase fold: X-ray crystallographic analysis of directly evolved 6-aminohexanoate-dimer hydrolase. Protein Sci. (2009)
- Release Date
- 2009-04-14
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A