SMTL ID : 2zn8.1

Crystal structure of Zn2+-bound form of ALG-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.35, D.37, S.39, V.41, E.46 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.35, A:D.37, A:S.39, A:V.41, A:E.46 ZN.2: 6 residues within 4Å: Chain A: D.102, D.104, S.106, M.108, E.113 Ligands: ZN.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.102, A:D.104, A:S.106, A:M.108, A:E.113 ZN.3: 3 residues within 4Å: Chain A: D.170, D.172 Ligands: NA.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.170, A:D.170, A:D.172 ZN.4: 6 residues within 4Å: Chain A: D.104, S.106, D.110, E.113, Q.144 Ligands: ZN.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.104, A:D.110, H2O.1 ZN.6: 5 residues within 4Å: Chain B: D.35, D.37, S.39, V.41, E.46 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.35, B:D.37, B:S.39, B:V.41, B:E.46 ZN.7: 6 residues within 4Å: Chain B: D.102, D.104, S.106, M.108, E.113 Ligands: ZN.9 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.102, B:D.104, B:S.106, B:M.108, B:E.113 ZN.8: 3 residues within 4Å: Chain B: D.170, D.172 Ligands: NA.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.170, B:D.170, B:D.172 ZN.9: 6 residues within 4Å: Chain B: D.104, S.106, D.110, E.113, Q.144 Ligands: ZN.7 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.104, B:D.110, H2O.2

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: D.168, D.170, D.172, W.174 Ligands: ZN.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.168, A:D.172, A:W.174 NA.10: 5 residues within 4Å: Chain B: D.168, D.170, D.172, W.174 Ligands: ZN.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.170, B:W.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, H. et al., Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism. Structure (2008)

Release Date

2008-09-09

Peptides

Programmed cell death protein 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Programmed cell death protein 6