SMTL ID : 2zne.3 (2 other biounits)

Crystal structure of Zn2+-bound form of des3-23ALG-2 complexed with Alix ABS peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.14, D.16, S.18, V.20, E.25 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.14, A:D.16, A:S.18, A:V.20, A:E.25 ZN.2: 6 residues within 4Å: Chain A: D.81, D.83, S.85, M.87, E.92 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.81, A:S.85, A:M.87, A:E.92 ZN.3: 3 residues within 4Å: Chain A: D.149, D.151 Ligands: NA.5 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.149, A:D.151, H2O.1, H2O.1 ZN.4: 6 residues within 4Å: Chain A: D.83, S.85, D.89, E.92, Q.123 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.83, A:D.83, A:D.89, H2O.1 ZN.6: 6 residues within 4Å: Chain B: D.14, D.16, S.18, V.20, I.21, E.25 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.14, B:D.16, B:V.20, B:E.25, H2O.3 ZN.7: 6 residues within 4Å: Chain B: D.81, D.83, S.85, M.87, E.92 Ligands: ZN.9 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.81, B:D.83, B:M.87, B:E.92, B:E.92 ZN.8: 3 residues within 4Å: Chain B: D.149, D.151 Ligands: NA.10 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.149, B:D.151, H2O.2, H2O.2 ZN.9: 5 residues within 4Å: Chain B: D.83, D.89, E.92, Q.123 Ligands: ZN.7 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.83, B:D.89, H2O.2

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: D.147, D.149, D.151, W.153 Ligands: ZN.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.151, A:W.153 NA.10: 5 residues within 4Å: Chain B: D.147, D.149, D.151, W.153 Ligands: ZN.8 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.147, B:W.153, B:W.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, H. et al., Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism. Structure (2008)

Release Date

2008-09-09

Peptides

Programmed cell death protein 6: AB
16-meric peptide from Programmed cell death 6-interacting protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Programmed cell death protein 6

16-meric peptide from Programmed cell death 6-interacting protein

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