SMTL ID : 2zni.1

Crystal structure of Pyrrolysyl-tRNA synthetase-tRNA(Pyl) complex from Desulfitobacterium hafniense

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

13 x CA: CALCIUM ION(Non-functional Binders)

CA.1: 2 residues within 4Å: Chain C: G.4, G.5 No protein-ligand interaction detected (PLIP) CA.2: 2 residues within 4Å: Chain C: G.60, U.61 No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain C: G.6, G.13 No protein-ligand interaction detected (PLIP) CA.4: 2 residues within 4Å: Chain C: G.48, G.49 No protein-ligand interaction detected (PLIP) CA.5: 2 residues within 4Å: Chain C: G.8, A.43 No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Chain C: U.40 No protein-ligand interaction detected (PLIP) CA.7: 1 residues within 4Å: Chain D: G.4 No protein-ligand interaction detected (PLIP) CA.8: 1 residues within 4Å: Chain D: U.61 No protein-ligand interaction detected (PLIP) CA.9: 1 residues within 4Å: Chain D: G.13 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain D: G.48 No protein-ligand interaction detected (PLIP) CA.11: 2 residues within 4Å: Chain D: G.8, A.10 No protein-ligand interaction detected (PLIP) CA.12: 2 residues within 4Å: Chain D: G.39, U.40 No protein-ligand interaction detected (PLIP) CA.13: 1 residues within 4Å: Chain D: G.26 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nozawa, K. et al., Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality. Nature (2009)

Release Date

2008-12-30

Peptides

Pyrrolysyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pyrrolysyl-tRNA synthetase

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