SMTL ID : 2znz.2 (5 other biounits)

Crystal structure of FFRP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-octamer

Ligands

8 x LYS: LYSINE(Non-covalent)

LYS.1: 14 residues within 4Å: Chain A: N.138, L.141, D.142, T.153, H.154, T.155 Chain E: L.159 Chain F: Y.100, E.118, T.119, T.120, G.121, Y.123, D.124 13 PLIP interactions: 1 Ligand-Ligand interactions, 5 interactions with chain F, 6 interactions with chain A, 1 interactions with chain E Hydrogen bonds: K.1, F:T.119, F:G.121, F:D.124, F:D.124, A:N.138, A:D.142, A:T.153, A:T.155, A:T.155 Hydrophobic interactions: F:Y.100, E:L.159 Water bridges: A:T.153 LYS.2: 13 residues within 4Å: Chain B: N.138, L.141, D.142, T.153, H.154, T.155 Chain G: Y.100, E.118, T.119, T.120, G.121, Y.123, D.124 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain G Hydrogen bonds: B:D.142, B:T.153, B:T.153, B:T.155, B:T.155, G:G.121, G:G.121, G:D.124 Water bridges: B:T.153 Hydrophobic interactions: G:Y.100 LYS.3: 13 residues within 4Å: Chain C: N.138, L.141, D.142, T.153, H.154, T.155 Chain H: Y.100, E.118, T.119, T.120, G.121, Y.123, D.124 10 PLIP interactions: 4 interactions with chain C, 1 Ligand-Ligand interactions, 5 interactions with chain H Hydrogen bonds: C:D.142, C:T.155, K.3, H:G.121, H:G.121, H:G.121 Water bridges: C:N.138, C:T.153 Hydrophobic interactions: H:Y.100, H:D.124 LYS.4: 14 residues within 4Å: Chain D: N.138, L.141, D.142, T.153, H.154, T.155 Chain E: Y.100, E.118, T.119, T.120, G.121, Y.123, D.124 Chain F: L.159 7 PLIP interactions: 3 interactions with chain D, 3 interactions with chain E, 1 interactions with chain F Hydrogen bonds: D:D.142, D:T.153, D:T.155, E:E.118, E:G.121, E:G.121 Hydrophobic interactions: F:L.159 LYS.5: 14 residues within 4Å: Chain A: L.159 Chain B: Y.100, E.118, T.119, T.120, G.121, Y.123, D.124 Chain E: N.138, L.141, D.142, T.153, H.154, T.155 10 PLIP interactions: 4 interactions with chain B, 4 interactions with chain E, 1 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: B:Y.100, A:L.159 Hydrogen bonds: B:T.119, B:G.121, B:D.124, E:N.138, E:D.142, E:T.155, K.5 Water bridges: E:T.153 LYS.6: 13 residues within 4Å: Chain C: Y.100, E.118, T.119, T.120, G.121, Y.123, D.124 Chain F: N.138, L.141, D.142, T.153, H.154, T.155 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain F Hydrophobic interactions: C:Y.100 Hydrogen bonds: C:G.121, C:G.121, F:D.142, F:T.153, F:T.155 Water bridges: F:T.153 LYS.7: 13 residues within 4Å: Chain D: Y.100, E.118, T.119, T.120, G.121, Y.123, D.124 Chain G: N.138, L.141, D.142, T.153, H.154, T.155 13 PLIP interactions: 6 interactions with chain G, 1 Ligand-Ligand interactions, 6 interactions with chain D Hydrogen bonds: G:D.142, G:T.153, G:T.155, G:T.155, K.7, D:G.121, D:G.121, D:G.121, D:D.124 Water bridges: G:N.138, G:T.153 Hydrophobic interactions: D:Y.100, D:D.124 LYS.8: 14 residues within 4Å: Chain A: Y.100, E.118, T.119, T.120, G.121, Y.123, D.124 Chain B: L.159 Chain H: N.138, L.141, D.142, T.153, H.154, T.155 9 PLIP interactions: 5 interactions with chain H, 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: H:D.142, H:T.153, H:T.153, H:T.155, H:T.155, A:G.121, A:G.121, A:D.124 Hydrophobic interactions: B:L.159

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, M. et al., Interactions between the archaeal transcription repressor FL11 and its coregulators lysine and arginine. Proteins (2009)

Release Date

2009-03-17

Peptides

Uncharacterized HTH-type transcriptional regulator PH1519: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

E
E

F
F

G
G

H
H

Uncharacterized HTH-type transcriptional regulator PH1519

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