SMTL ID : 2zp9.1 (1 other biounit)

The Nature of the TRAP:Anti-TRAP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-12-18-mer

Ligands

12 x TRP: TRYPTOPHAN(Non-covalent)

TRP.1: 15 residues within 4Å: Chain A: T.23, R.24, G.25, D.27, T.28, S.51 Chain B: V.19, I.20, G.21, H.32, A.44, Q.45, T.47, T.50, I.53 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B, Hydrogen bonds: A:G.25, A:T.28, A:S.51, B:Q.45, B:T.47, B:T.47 Hydrophobic interactions: B:V.19, B:I.53 TRP.2: 12 residues within 4Å: Chain B: T.23, R.24, G.25, A.26, T.28, S.51 Chain F: H.31, Q.45, T.47, E.48, H.49, T.50 11 PLIP interactions: 7 interactions with chain F, 4 interactions with chain B, Hydrophobic interactions: F:T.47, B:R.24 Hydrogen bonds: F:T.47, F:T.47, F:E.48, F:H.49, F:T.50, B:G.25, B:T.28, B:T.28 Salt bridges: F:H.49 TRP.5: 15 residues within 4Å: Chain F: T.23, R.24, G.25, D.27, T.28, S.51, A.52 Chain G: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, T.50 11 PLIP interactions: 4 interactions with chain F, 7 interactions with chain G, Hydrogen bonds: F:T.23, F:G.25, F:S.51, F:S.51, G:Q.45, G:T.47 Hydrophobic interactions: G:V.19, G:A.44, G:T.47, G:T.50 Salt bridges: G:H.31 TRP.6: 15 residues within 4Å: Chain G: L.22, T.23, R.24, G.25, T.28, S.51, A.52 Chain K: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, T.50 7 PLIP interactions: 3 interactions with chain K, 3 interactions with chain G, 1 Ligand-Ligand interactions Hydrophobic interactions: K:V.19, K:A.44 Hydrogen bonds: K:Q.45, G:G.25, G:S.51, G:S.51, W.6 TRP.7: 15 residues within 4Å: Chain K: T.23, R.24, G.25, D.27, T.28, S.51 Chain L: V.19, I.20, G.21, H.32, A.44, Q.45, T.47, T.50, I.53 8 PLIP interactions: 3 interactions with chain K, 5 interactions with chain L, Hydrogen bonds: K:G.25, K:T.28, K:S.51, L:Q.45, L:T.47, L:T.47 Hydrophobic interactions: L:V.19, L:I.53 TRP.8: 12 residues within 4Å: Chain L: T.23, R.24, G.25, A.26, T.28, S.51 Chain P: H.31, Q.45, T.47, E.48, H.49, T.50 11 PLIP interactions: 7 interactions with chain P, 4 interactions with chain L, Hydrophobic interactions: P:T.47, L:R.24 Hydrogen bonds: P:T.47, P:T.47, P:E.48, P:H.49, P:T.50, L:G.25, L:T.28, L:T.28 Salt bridges: P:H.49 TRP.11: 15 residues within 4Å: Chain P: T.23, R.24, G.25, D.27, T.28, S.51, A.52 Chain Q: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, T.50 11 PLIP interactions: 7 interactions with chain Q, 4 interactions with chain P Hydrophobic interactions: Q:V.19, Q:A.44, Q:T.47, Q:T.50 Hydrogen bonds: Q:Q.45, Q:T.47, P:T.23, P:G.25, P:S.51, P:S.51 Salt bridges: Q:H.31 TRP.12: 15 residues within 4Å: Chain Q: L.22, T.23, R.24, G.25, T.28, S.51, A.52 Chain U: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, T.50 7 PLIP interactions: 1 Ligand-Ligand interactions, 3 interactions with chain U, 3 interactions with chain Q Hydrogen bonds: W.12, U:Q.45, Q:G.25, Q:S.51, Q:S.51 Hydrophobic interactions: U:V.19, U:A.44 TRP.13: 15 residues within 4Å: Chain U: T.23, R.24, G.25, D.27, T.28, S.51 Chain V: V.19, I.20, G.21, H.32, A.44, Q.45, T.47, T.50, I.53 8 PLIP interactions: 3 interactions with chain U, 5 interactions with chain V, Hydrogen bonds: U:G.25, U:T.28, U:S.51, V:Q.45, V:T.47, V:T.47 Hydrophobic interactions: V:V.19, V:I.53 TRP.14: 12 residues within 4Å: Chain V: T.23, R.24, G.25, A.26, T.28, S.51 Chain Z: H.31, Q.45, T.47, E.48, H.49, T.50 11 PLIP interactions: 4 interactions with chain V, 7 interactions with chain Z, Hydrophobic interactions: V:R.24, Z:T.47 Hydrogen bonds: V:G.25, V:T.28, V:T.28, Z:T.47, Z:T.47, Z:E.48, Z:H.49, Z:T.50 Salt bridges: Z:H.49 TRP.17: 15 residues within 4Å: Chain 0: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, T.50 Chain Z: T.23, R.24, G.25, D.27, T.28, S.51, A.52 11 PLIP interactions: 7 interactions with chain 0, 4 interactions with chain Z, Hydrophobic interactions: 0:V.19, 0:A.44, 0:T.47, 0:T.50 Hydrogen bonds: 0:Q.45, 0:T.47, Z:T.23, Z:G.25, Z:S.51, Z:S.51 Salt bridges: 0:H.31 TRP.18: 15 residues within 4Å: Chain 0: L.22, T.23, R.24, G.25, T.28, S.51, A.52 Chain A: V.19, G.21, H.31, H.32, A.44, Q.45, T.47, T.50 7 PLIP interactions: 3 interactions with chain 0, 3 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: 0:G.25, 0:S.51, 0:S.51, A:Q.45, W.18 Hydrophobic interactions: A:V.19, A:A.44

6 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain D: C.12, C.15, C.26, C.29 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.12, D:C.15, D:C.29 ZN.4: 4 residues within 4Å: Chain E: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.12, E:C.15, E:C.26, E:C.29 ZN.9: 4 residues within 4Å: Chain N: C.12, C.15, C.26, C.29 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:C.12, N:C.15, N:C.29 ZN.10: 4 residues within 4Å: Chain O: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:C.12, O:C.15, O:C.26, O:C.29 ZN.15: 4 residues within 4Å: Chain X: C.12, C.15, C.26, C.29 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:C.12, X:C.15, X:C.29 ZN.16: 4 residues within 4Å: Chain Y: C.12, C.15, C.26, C.29 4 PLIP interactions: 4 interactions with chain Y Metal complexes: Y:C.12, Y:C.15, Y:C.26, Y:C.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, M. et al., The nature of the TRAP-Anti-TRAP complex. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-02-03

Peptides

Transcription attenuation protein mtrB: ABFGKLPQUVZ0
Tryptophan RNA-binding attenuator protein-inhibitory protein: CDEHIJMNORSTWXY123

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

F
K

G
L

K
F

L
G

P
K

Q
L

U
F

V
G

Z
K

0
L

C
H

D
I

E
J

H
M

I
N

J
O

M
H

N
I

O
J

R
M

S
N

T
O

W
H

X
I

Y
J

1
M

2
N

3
O

Transcription attenuation protein mtrB

Tryptophan RNA-binding attenuator protein-inhibitory protein

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