SMTL ID : 2zpl.4 (3 other biounits)

Crystal structure analysis of PDZ domain A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

3 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 1 residues within 4Å: Chain A: D.51 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.51, H2O.1, H2O.1, H2O.2 NI.2: 4 residues within 4Å: Chain A: H.75 Chain B: G.1 Chain C: A.77, E.83 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:H.75, B:G.1, H2O.2, H2O.2, H2O.2 NI.4: 2 residues within 4Å: Chain A: E.83 Chain C: H.75 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.75

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain B: V.3, D.37, W.38, D.39 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.38, B:D.39 Water bridges: B:R.42 GOL.5: 8 residues within 4Å: Chain B: V.3, R.4 Chain C: I.49, G.50, D.51, W.76, A.77, F.78 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.50, C:D.51, C:W.76, C:F.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inaba, K. et al., Crystal structure analysis of PDZ-domain A. To be Published

Release Date

2008-10-21

Peptides

Regulator of sigma E protease: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Regulator of sigma E protease

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