SMTL ID : 2zqm.1 (1 other biounit)

Crystal structure of the prefoldin beta subunit from Thermococcus strain KS-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 6 residues within 4Å: Chain A: A.88, R.91, Q.92, K.95 Ligands: GOL.2, GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.92 Water bridges: A:K.95 Salt bridges: A:R.91, A:K.95, A:K.95 CIT.7: 6 residues within 4Å: Chain B: A.88, R.91, Q.92, K.95 Ligands: GOL.8, GOL.10 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.92 Water bridges: B:K.95 Salt bridges: B:R.91, B:K.95, B:K.95 CIT.13: 6 residues within 4Å: Chain C: A.88, R.91, Q.92, K.95 Ligands: GOL.14, GOL.16 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Q.92 Water bridges: C:K.95 Salt bridges: C:R.91, C:K.95, C:K.95 CIT.19: 6 residues within 4Å: Chain D: A.88, R.91, Q.92, K.95 Ligands: GOL.20, GOL.22 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:Q.92 Water bridges: D:K.95 Salt bridges: D:R.91, D:K.95, D:K.95

20 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: V.84, R.91 Ligands: CIT.1 Ligand excluded by PLIP GOL.3: 4 residues within 4Å: Chain A: Q.21, V.25, Q.92, L.96 Ligand excluded by PLIP GOL.4: 3 residues within 4Å: Chain A: K.95, K.99 Ligands: CIT.1 Ligand excluded by PLIP GOL.5: 7 residues within 4Å: Chain A: D.52, A.53, V.54, V.55, K.65, T.66, T.67 Ligand excluded by PLIP GOL.6: 7 residues within 4Å: Chain A: Y.56 Chain B: Y.56 Chain C: Y.56 Chain D: Y.56 Ligands: GOL.12, GOL.18, GOL.24 Ligand excluded by PLIP GOL.8: 3 residues within 4Å: Chain B: V.84, R.91 Ligands: CIT.7 Ligand excluded by PLIP GOL.9: 4 residues within 4Å: Chain B: Q.21, V.25, Q.92, L.96 Ligand excluded by PLIP GOL.10: 3 residues within 4Å: Chain B: K.95, K.99 Ligands: CIT.7 Ligand excluded by PLIP GOL.11: 7 residues within 4Å: Chain B: D.52, A.53, V.54, V.55, K.65, T.66, T.67 Ligand excluded by PLIP GOL.12: 7 residues within 4Å: Chain A: Y.56 Chain B: Y.56 Chain C: Y.56 Chain D: Y.56 Ligands: GOL.6, GOL.18, GOL.24 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain C: V.84, R.91 Ligands: CIT.13 Ligand excluded by PLIP GOL.15: 4 residues within 4Å: Chain C: Q.21, V.25, Q.92, L.96 Ligand excluded by PLIP GOL.16: 3 residues within 4Å: Chain C: K.95, K.99 Ligands: CIT.13 Ligand excluded by PLIP GOL.17: 7 residues within 4Å: Chain C: D.52, A.53, V.54, V.55, K.65, T.66, T.67 Ligand excluded by PLIP GOL.18: 7 residues within 4Å: Chain A: Y.56 Chain B: Y.56 Chain C: Y.56 Chain D: Y.56 Ligands: GOL.6, GOL.12, GOL.24 Ligand excluded by PLIP GOL.20: 3 residues within 4Å: Chain D: V.84, R.91 Ligands: CIT.19 Ligand excluded by PLIP GOL.21: 4 residues within 4Å: Chain D: Q.21, V.25, Q.92, L.96 Ligand excluded by PLIP GOL.22: 3 residues within 4Å: Chain D: K.95, K.99 Ligands: CIT.19 Ligand excluded by PLIP GOL.23: 7 residues within 4Å: Chain D: D.52, A.53, V.54, V.55, K.65, T.66, T.67 Ligand excluded by PLIP GOL.24: 7 residues within 4Å: Chain A: Y.56 Chain B: Y.56 Chain C: Y.56 Chain D: Y.56 Ligands: GOL.6, GOL.12, GOL.18 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kida, H. et al., Structural and molecular characterization of the prefoldin beta subunit from Thermococcus strain KS-1. J.Mol.Biol. (2008)

Release Date

2008-08-26

Peptides

Prefoldin beta subunit 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Prefoldin beta subunit 1

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