- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 4 x IPR: ISOPENTYL PYROPHOSPHATE(Non-covalent)
IPR.2: 16 residues within 4Å:- Chain A: I.4, R.7, K.8, H.11, S.96, R.98, Q.130, H.155, N.157, Q.160, E.161, Q.164, S.195, W.225
- Ligands: FMN.1, MG.3
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:W.225, A:W.225
- Hydrogen bonds: A:S.96, A:Q.130, A:N.157, A:Q.160
- Water bridges: A:R.98, A:G.127, A:E.161, A:E.161, A:Q.164, A:Q.164
- Salt bridges: A:R.7, A:R.7, A:K.8, A:K.8, A:H.11, A:R.98, A:H.155, A:H.155
IPR.5: 15 residues within 4Å:- Chain B: I.4, R.7, K.8, H.11, S.96, R.98, H.155, N.157, Q.160, E.161, Q.164, S.195, W.225
- Ligands: FMN.4, MG.6
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:W.225, B:W.225
- Hydrogen bonds: B:S.96, B:Q.130, B:N.157, B:Q.160
- Water bridges: B:R.98, B:Q.130, B:Q.164
- Salt bridges: B:R.7, B:R.7, B:K.8, B:K.8, B:H.11, B:R.98, B:H.155
IPR.8: 16 residues within 4Å:- Chain C: I.4, R.7, K.8, H.11, S.96, R.98, Q.130, H.155, N.157, Q.160, E.161, Q.164, S.195, W.225
- Ligands: FMN.7, MG.9
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:W.225, C:W.225
- Hydrogen bonds: C:S.96, C:Q.130, C:N.157, C:Q.160
- Water bridges: C:K.8
- Salt bridges: C:R.7, C:R.7, C:K.8, C:K.8, C:H.11, C:R.98, C:H.155
IPR.11: 16 residues within 4Å:- Chain D: I.4, R.7, K.8, H.11, S.96, R.98, Q.130, H.155, N.157, Q.160, E.161, Q.164, S.195, W.225
- Ligands: FMN.10, MG.12
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:W.225, D:W.225
- Hydrogen bonds: D:S.96, D:Q.130, D:N.157, D:Q.160
- Water bridges: D:R.98
- Salt bridges: D:R.7, D:R.7, D:K.8, D:K.8, D:H.11, D:R.98, D:H.155, D:H.155
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain A: R.98, E.161
- Ligands: IPR.2
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.161, H2O.5, H2O.6
MG.6: 4 residues within 4Å:- Chain B: R.98, N.157, E.161
- Ligands: IPR.5
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.161, H2O.10, H2O.11
MG.9: 4 residues within 4Å:- Chain C: R.98, N.157, E.161
- Ligands: IPR.8
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:E.161
MG.12: 3 residues within 4Å:- Chain D: R.98, E.161
- Ligands: IPR.11
2 PLIP interactions:1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.161, H2O.22
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Unno, H. et al., New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase. J.Biol.Chem. (2009)
- Release Date
- 2009-01-20
- Peptides
- Isopentenyl-diphosphate delta-isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 4 x IPR: ISOPENTYL PYROPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Unno, H. et al., New role of flavin as a general acid-base catalyst with no redox function in type 2 isopentenyl-diphosphate isomerase. J.Biol.Chem. (2009)
- Release Date
- 2009-01-20
- Peptides
- Isopentenyl-diphosphate delta-isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D