SMTL ID : 2zsu.3 (2 other biounits)

Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3, P1 form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x AG3: 1-{4-[(3-aminopropyl)amino]butyl}guanidine(Non-covalent)

AG3.1: 15 residues within 4Å: Chain A: E.8, Y.10, T.51, V.52, Q.53, Y.62, H.63, D.87, D.161, S.162, D.164, Q.194, F.201, Y.229, W.233 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Q.53 Hydrogen bonds: A:Y.10, A:Y.10, A:V.52, A:V.52, A:D.87, A:S.162 Water bridges: A:G.89, A:D.164 Salt bridges: A:E.8, A:D.164 pi-Cation interactions: A:Y.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mizutani, H. et al., Crystal structure of spermidine synthase from Pyrococcus horikoshii OT3. To be Published

Release Date

2008-10-21

Peptides

spermidine synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

spermidine synthase

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