SMTL ID : 2zt6.1

Crystal structure of human Glycyl-tRNA synthetase (GlyRS) in complex with AMPCPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

homo-dimer

Ligands

2 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.1: 13 residues within 4Å: Chain A: R.159, R.277, E.279, I.287, R.288, V.289, F.292, M.294, E.403, I.404, S.524, G.526, R.529 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:R.277, A:R.277, A:E.279, A:V.289, A:E.403, A:I.404, A:R.529 Water bridges: A:R.159 Salt bridges: A:R.159, A:R.288, A:R.529 pi-Stacking: A:F.292, A:F.292 pi-Cation interactions: A:R.529, A:R.529 APC.2: 13 residues within 4Å: Chain B: R.159, R.277, E.279, I.287, R.288, V.289, F.292, M.294, E.403, I.404, S.524, G.526, R.529 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.277, B:R.277, B:E.279, B:V.289, B:E.403, B:E.403, B:I.404, B:R.529 Water bridges: B:R.159 Salt bridges: B:R.159, B:R.288, B:R.529 pi-Stacking: B:F.292, B:F.292 pi-Cation interactions: B:R.529, B:R.529

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, R.T. et al., Crystal structures and biochemical analyses suggest unique mechanism and role for human GlyRS in Ap4A homeostasis. To be Published

Release Date

2009-08-25

Peptides

Glycyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycyl-tRNA synthetase

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